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Genomics

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  • Genome-wide association between transcription factor expression and chromatin accessibility reveals chromatin state regulators
    David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik
    bioRxiv 043414; doi: https://doi.org/10.1101/043414
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  • Whole-genome characterization in pedigreed non-human primates using Genotyping-By-Sequencing and imputation
    Ben N Bimber, Michael J Raboin, John Letaw, Kimberly Nevonen, Jennifer E Spindel, Susan R McCouch, Rita Cervera-Juanes, Eliot Spindel, Lucia Carbone, Betsy Ferguson, Amanda Vinson
    bioRxiv 043240; doi: https://doi.org/10.1101/043240
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  • A method to exploit the structure of genetic ancestry space to enhance case-control studies
    Corneliu A. Bodea, Benjamin M. Neale, Stephan Ripke, The International IBD Genetics Consortium, Mark J. Daly, Bernie Devlin, Kathryn Roeder
    bioRxiv 043166; doi: https://doi.org/10.1101/043166
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  • Nomadic Lifestyle of Lactobacillus plantarum Revealed by Comparative Genomics of 54 strains Isolated from Different Niches
    Maria Elena Martino, Jumamurat R. Bayjanov, Brian E. Caffrey, Michiel Wels, Pauline Joncour, Sandrine Hughes, Benjamin Gillet, Michiel Kleerebezem, Sacha A.F.T. van Hijum, François Leulier
    bioRxiv 043117; doi: https://doi.org/10.1101/043117
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  • Methylation of histone H4 lysine 20 by PR-Set7 ensures the integrity of late replicating sequence domains in Drosophila
    Yulong Li (), Robin L. Armstrong, Robert J. Duronio, David M. MacAlpine
    bioRxiv 028100; doi: https://doi.org/10.1101/028100
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  • A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle
    Hermann Schwarzenbacher, Christine Wurmser, Krzysztof Flisikowski, Lubica Misurova, Simone Jung, Martin C. Langenmayer, Angelika Schnieke, Gabriela Knubben-Schweizer, Ruedi Fries, Hubert Pausch
    bioRxiv 036889; doi: https://doi.org/10.1101/036889
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  • Accurate promoter and enhancer identification in 127 ENCODE and Roadmap Epigenomics cell types and tissues by GenoSTAN
    Benedikt Zacher, Margaux Michel, Björn Schwalb, Patrick Cramer, Achim Tresch, Julien Gagneur
    bioRxiv 041020; doi: https://doi.org/10.1101/041020
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  • Fast and accurate single-cell RNA-Seq analysis by clustering of transcript-compatibility counts
    Vasilis Ntranos, Govinda M. Kamath, Jesse Zhang, Lior Pachter, David N. Tse
    bioRxiv 036863; doi: https://doi.org/10.1101/036863
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  • The roles of LINEs, LTRs and SINEs in lineage-specific gene family expansions in the human and mouse genomes
    Václav Janoušek, Christina M. Laukaitis, Alexey Yanchukov, Robert C. Karn
    bioRxiv 042309; doi: https://doi.org/10.1101/042309
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  • Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis
    Filip Husnik, John P. McCutcheon
    bioRxiv 042267; doi: https://doi.org/10.1101/042267
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