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Genomics

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  • Mirror bisulfite sequencing — a method for single-base resolution of hydroxymethylcytosine
    Darany Tan, Tzu Hung Chung, Xueguang Sun, Xi-Yu Jia
    bioRxiv 019943; doi: https://doi.org/10.1101/019943
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  • Character trees from transcriptome data: origin and individuation of morphological characters and the so-called “species signal”
    Jacob M. Musser, Günter P. Wagner
    bioRxiv 019380; doi: https://doi.org/10.1101/019380
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  • Detection and interpretation of shared genetic influences on 40 human traits
    Joseph K. Pickrell, Tomaz Berisa, Laure Segurel, Joyce Y. Tung, David Hinds
    bioRxiv 019885; doi: https://doi.org/10.1101/019885
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  • A Unified Architecture of Transcriptional Regulatory Elements
    Robin Andersson, Albin Sandelin, Charles G. Danko
    bioRxiv 019844; doi: https://doi.org/10.1101/019844 New Results
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  • Deep sequencing of small RNA facilitates tissue and sex specific microRNA discovery in zebrafish
    Candida Vaz, Choon Wei Wee, Gek Ping Serene Lee, Philip W Ingham, Vivek Tanavde, Sinnakaruppan Mathavan
    bioRxiv 019760; doi: https://doi.org/10.1101/019760
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  • Determining Exon Connectivity in Complex mRNAs by Nanopore Sequencing
    Mohan T. Bolisetty, Gopinath Rajadinakaran, Brenton R. Graveley
    bioRxiv 019752; doi: https://doi.org/10.1101/019752
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  • Sources of PCR-induced distortions in high-throughput sequencing datasets
    Justus M Kebschull, Anthony M Zador
    bioRxiv 008375; doi: https://doi.org/10.1101/008375
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  • Building Genomic Analysis Pipelines in a Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics, Metagenomics and RNA-seq
    Ben Busby, Allissa Dillman, Claire L. Simpson, Ian Fingerman, Sijung Yun, David M. Kristensen, Lisa Federer, Naisha Shah, Matthew C. LaFave, Laura Jimenez-Barron, Manjusha Pande, Wen Luo, Brendan Miller, Cem Mayden, Dhruva Chandramohan, Kipper Fletez-Brant, Paul W. Bible, Sergej Nowoshilow, Alfred Chan, Eric JC Galvez, Jeremy Chignell, Joseph N. Paulson, Manoj Kandpal, Suhyeon Yoon, Esther Asaki, Abhinav Nellore, Adam Stine, Robert Sanders, Jesse Becker, Matt Lesko, Mordechai Abzug, Eugene Yaschenko
    bioRxiv 018085; doi: https://doi.org/10.1101/018085
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  • Sequencing of 15,622 gene-bearing BACs reveals new features of the barley genome
    María Muñoz-Amatriaín, S Lonardi, MC Luo, K Madishetty, JT Svensson, MJ Moscou, S Wanamaker, T Jiang, A Kleinhofs, GJ Muehlbauer, RP Wise, N Stein, Y Ma, E Rodriguez, D Kudrna, PR Bhat, S Chao, P Condamine, S Heinen, J Resnik, R Wing, HN Witt, M Alpert, M Beccuti, S Bozdag, F Cordero, H Mirebrahim, R Ounit, Y Wu, F You, J Zheng, H Šimková, J Doležel, J Grimwood, J Schmutz, D Duma, L Altschmied, T Blake, P Bregitzer, L Cooper, M Dilbirligi, A Falk, L Feiz, A Graner, P Gustafson, PM Hayes, P Lemaux, J Mammadov, TJ Close
    bioRxiv 018978; doi: https://doi.org/10.1101/018978
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  • Distinct nucleosome distribution patterns in two structurally and functionally differentiated nuclei of a unicellular eukaryote
    Jie Xiong, Shan Gao, Wen Dui, Wentao Yang, Xiao Chen, Sean D. Taverna, Ronald E. Pearlman, Wendy Ashlock, Wei Miao, Yifan Liu
    bioRxiv 018754; doi: https://doi.org/10.1101/018754
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