Genomics

Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha, Yungil Kim, Ariel D. H. Gewirtz, Brian Jo, Chuan Gao, Ian C. McDowell, GTEx Consortium, Barbara E. Engelhardt, Alexis Battle

bioRxiv 078741; doi: https://doi.org/10.1101/078741

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Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement
Sanzhen Liu, Jun Zheng, Pierre Migeon, Jie Ren, Ying Hu, Cheng He, Hongjun Liu, Junjie Fu, Frank F. White, Christopher Toomajian, Guoying Wang

bioRxiv 078790; doi: https://doi.org/10.1101/078790

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MUMdex: MUM-based structural variation detection
Peter A. Andrews, Ivan Iossifov, Jude Kendall, Steven Marks, Lakshmi Muthuswamy, Zihua Wang, Dan Levy, Michael Wigler

bioRxiv 078261; doi: https://doi.org/10.1101/078261

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Quantitative analysis of cryptic splicing associated with TDP-43 depletion
Jack Humphrey, Warren Emmett, Pietro Fratta, Adrian M. Isaacs, Vincent Plagnol

bioRxiv 076117; doi: https://doi.org/10.1101/076117

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"Same Difference": Comprehensive evaluation of three DNA methylation measurement platforms
Thadeous J Kacmarczyk, Mame P. Fall, Xihui Zhang, Yuan Xin, Yushan Li, Alicia Alonso, Doron Betel

bioRxiv 077941; doi: https://doi.org/10.1101/077941

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Transcriptional regulatory logic of the diurnal cycle in the mouse liver
Jonathan Aryeh Sobel, Irina Krier, Teemu Andersin, Sunil Raghav, Donatella Canella, Federica Gilardi, Alexandra Styliani Kalantzi, Guillaume Rey, Benjamin Weger, Frederic Gachon, Matteo Dal Peraro, Nouria Hernandez, Ueli Schibler, Bart Deplancke, Felix Naef

bioRxiv 077818; doi: https://doi.org/10.1101/077818

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Genome-wide profiling of heritable and de novo STR variations
Thomas Willems, Dina Zielinski, Assaf Gordon, Melissa Gymrek, Yaniv Erlich

bioRxiv 077727; doi: https://doi.org/10.1101/077727

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DNA Compass: a secure, client-side site for navigating personal genetic information
Charles Curnin, Assaf Gordon, Yaniv Erlich

bioRxiv 077867; doi: https://doi.org/10.1101/077867

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Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Sarah L. Castro-Wallace, Charles Y. Chiu, Kristen K. John, Sarah E. Stahl, Kathleen H. Rubins, Alexa B. R. McIntyre, Jason P. Dworkin, Mark L. Lupisella, David J Smith, Douglas J. Botkin, Timothy A. Stephenson, Sissel Juul, Daniel J. Turner, Fernando Izquierdo, Scot Federman, Doug Stryke, Sneha Somasekar, Noah Alexander, Guixia Yu, Christopher E. Mason, Aaron S Burton

bioRxiv 077651; doi: https://doi.org/10.1101/077651

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Short template switch events explain mutation clusters in the human genome
Ari Löytynoja, Nick Goldman

bioRxiv 038380; doi: https://doi.org/10.1101/038380

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Genomics

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