Genomics

Using RNA-seq for genomic scaffold placement, correcting assemblies, and genetic map creation in a common Brassica rapa mapping population
RJ Cody Markelz, Michael F Covington, Marcus T Brock, Upendra K Devisetty, Daniel J Kliebenstein, Cynthia Weinig, Julin N Maloof

bioRxiv 076745; doi: https://doi.org/10.1101/076745

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Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
Jaime Huerta-Cepas, Kristoffer Forslund, Damian Szklarczyk, Lars Juhl Jensen, Christian von Mering, Peer Bork

bioRxiv 076331; doi: https://doi.org/10.1101/076331

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Extraction of ultrashort DNA molecules from herbarium specimens
Rafal M. Gutaker, Ella Reiter, Anja Furtwängler, Verena J. Schuenemann, Hernán A. Burbano

bioRxiv 076299; doi: https://doi.org/10.1101/076299

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Using MinION nanopore sequencing to generate a de novo eukaryotic draft genome: preliminary physiological and genomic description of the extremophilic red alga Galdieria sulphuraria strain SAG 107.79
Amanda M. Davis, Manuela Iovinella, Sally James, Thomas Robshaw, Jennifer R. Dodson, Lorenzo Herrero-Davila, James H. Clark, Maria Agapiou, Simon J. McQueen-Mason, Gabriele Pinto, Claudia Ciniglia, James P. J. Chong, Peter D. Ashton, Seth J. Davis

bioRxiv 076208; doi: https://doi.org/10.1101/076208

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Estimating Error Models for Whole Genome Sequencing Using Mixtures of Dirichlet-Multinomial Distributions
Steven H. Wu, Rachel S. Schwartz, David J. Winter, Donald F. Conrad, Reed A. Cartwright

bioRxiv 031724; doi: https://doi.org/10.1101/031724

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Genome-wide association study of HIV whole genome sequences validated using drug resistance
Robert A. Power, Siva Davaniah, Anne Derache, Eduan Wilkinson, Frank Tanser, Ravindra K. Gupta, Deenan Pillay, Tulio de Oliveira

bioRxiv 076216; doi: https://doi.org/10.1101/076216

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Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing data
Axel Barlow, Gloria G. Fortes, Love Dalén, Ron Pinhasi, Boris Gasparyan, Gernot Rabeder, Christine Frischauf, Johanna L.A. Paijmans, Michael Hofreiter

bioRxiv 075911; doi: https://doi.org/10.1101/075911

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Landscape of X chromosome inactivation across human tissues
Taru Tukiainen, Alexandra-Chloé Villani, Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Matt Aguirre, Laura Gauthier, Mark Fleharty, Andrew Kirby, Beryl B. Cummings, Stephane E. Castel, Konrad J. Karczewski, François Aguet, Andrea Byrnes, Consortium GTEx, Tuuli Lappalainen, Aviv Regev, Kristin G. Ardlie, Nir Hacohen, Daniel G. MacArthur

bioRxiv 073957; doi: https://doi.org/10.1101/073957

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Insertional mutagenesis in PLN^R9C transgenic mouse: a case report and a review of the literature on cardiac-specific transgenic expression
Alexander Kraev

bioRxiv 075671; doi: https://doi.org/10.1101/075671 Contradictory Results

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Estimating the Selective Effect of Heterozygous Protein Truncating Variants from Human Exome Data
Christopher A. Cassa, Donate Weghorn, Daniel J. Balick, Daniel M. Jordan, David Nusinow, Kaitlin E. Samocha, Anne O'Donnell Luria, Daniel G. MacArthur, Mark J. Daly, David R. Beier, Shamil R. Sunyaev

bioRxiv 075523; doi: https://doi.org/10.1101/075523

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Genomics

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