Genomics

Estimating cellular pathways from an ensemble of heterogeneous data sources
Alexander M. Franks, Florian Markowetz, Edoardo Airoldi

bioRxiv 006478; doi: https://doi.org/10.1101/006478

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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly repetitive transposable elements
Rajiv C. McCoy, Ryan W. Taylor, Timothy A. Blauwkamp, Joanna L. Kelley, Michael Kertesz, Dmitry Pushkarev, Dmitri A. Petrov, Anna-Sophie Fiston-Lavier

bioRxiv 001834; doi: https://doi.org/10.1101/001834

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Musashi proteins are post-transcriptional regulators of the epithelial-luminal cell state
Yarden Katz, Feifei Li, Nicole Lambert, Ethan Sokol, Wai-Leong Tam, Albert W. Cheng, Edoardo M. Airoldi, Christopher J. Lengner, Piyush B. Gupta, Zhengquan Yu, Rudolf Jaenisch, Christopher B. Burge

bioRxiv 006270; doi: https://doi.org/10.1101/006270

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MixMir: microRNA motif discovery from gene expression data using mixed linear models
Liyang Diao, Antoine Marcais, Scott Norton, Kevin C. Chen

bioRxiv 004010; doi: https://doi.org/10.1101/004010

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Accounting for biases in riboprofiling data indicates a major role for proline and not positive amino acids in stalling translation
Carlo G. Artieri, Hunter B. Fraser

bioRxiv 006221; doi: https://doi.org/10.1101/006221

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Genome-wide Identification of Zero Nucleotide Recursive Splicing in Drosophila
Michael Duff, Sara Olson, Xintao Wei, Ahmad Osman, Alex Plocik, Mohan Bolisetty, Susan Celniker, Brenton R. Graveley

bioRxiv 006163; doi: https://doi.org/10.1101/006163

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Complete plastid genome assembly of invasive plant, Centaurea diffusa
Kathryn G. Turner, Christopher J. Grassa

bioRxiv 005900; doi: https://doi.org/10.1101/005900

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Validation of methods for Low-volume RNA-seq
Peter A. Combs, Michael B. Eisen

bioRxiv 006130; doi: https://doi.org/10.1101/006130 Confirmatory Results

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Avoiding test set bias with rank-based prediction
Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T. Leek

bioRxiv 005983; doi: https://doi.org/10.1101/005983

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Power analysis of artificial selection experiments using efficient whole genome simulation of quantitative traits
Darren Kessner, John Novembre

bioRxiv 005892; doi: https://doi.org/10.1101/005892

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Genomics

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