Genomics

What’s in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual
Lynsey K. Whitacre, Polyana C. Tizioto, JaeWoo Kim, Tad S. Sonstegard, Steven G. Schroeder, Leeson J. Alexander, Juan F. Medrano, Robert D. Schnabel, Jeremy F. Taylor, Jared E. Decker

bioRxiv 022731; doi: https://doi.org/10.1101/022731

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Improving the Efficiency of Genomic Selection in Chinese Simmental beef cattle
Jiangwei Xia, Yang Wu, Huizhong Fang, Wengang Zhang, Yuxin Song, Lupei Zhang, Xue Gao, Yan Chen, Junya Li, Huijiang Gao

bioRxiv 022673; doi: https://doi.org/10.1101/022673

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Adaptive divergence in the bovine genome
William Barendse, Sean McWilliam, Rowan J. Bunch, Blair E. Harrison

bioRxiv 022764; doi: https://doi.org/10.1101/022764

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Investigating the Evolutionary Importance of Denisovan Introgressions in Papua New Guineans and Australians
Ya Hu, Qiliang Ding, Yi Wang, Shuhua Xu, Yungang He, Minxian Wang, Jiucun Wang, Li Jin

bioRxiv 022632; doi: https://doi.org/10.1101/022632

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The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh
James Boocock, David Chagné, Tony R Merriman, Michael A Black

bioRxiv 021857; doi: https://doi.org/10.1101/021857

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Whole genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection
PingHsun Hsieh, Krishna R. Veeramah, Joseph Lachance, Sarah A. Tishkoff, Jeffrey D. Wall, Michael F. Hammer, Ryan N. Gutenkunst

bioRxiv 022194; doi: https://doi.org/10.1101/022194

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TreeQTL: hierarchical error control for eQTL findings
Christine Peterson, Marina Bogomolov, Yoav Benjamini, Chiara Sabatti

bioRxiv 021170; doi: https://doi.org/10.1101/021170

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Heterozygous gene truncation delineates the human haploinsufficient genome
István Bartha, Antonio Rausell, Paul J McLaren, Pejman Mohammadi, Manuel Tardaguila, Nimisha Chaturvedi, Jacques Fellay, Amalio Telenti

bioRxiv 010611; doi: https://doi.org/10.1101/010611

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Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation
David E. Weinberg, Premal Shah, Stephen W. Eichhorn, Jeffrey A. Hussmann, Joshua B. Plotkin, David P. Bartel

bioRxiv 021501; doi: https://doi.org/10.1101/021501

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Genomic prediction of celiac disease targeting HLA-positive individuals
Gad Abraham, Alexia Rohmer, Jason A. Tye-Din, Michael Inouye

bioRxiv 017608; doi: https://doi.org/10.1101/017608

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Genomics

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