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Microbiology

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  • Comparison of subtyping approaches and the underlying drivers of microbial signatures for chronic rhinosinusitis
    Kristi Biswas, Raewyn Cavubati, Shan Gunaratna, Michael Hoggard, Sharon Waldvogel-Thurlow, Jiwon Hong, Kevin Chang, Brett Wagner Mackenzie, Michael W. Taylor, Richard G. Douglas
    bioRxiv 494393; doi: https://doi.org/10.1101/494393
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  • Uncovering the unexplored diversity of thioamidated ribosomal peptides in Actinobacteria using the RiPPER genome mining tool
    Javier Santos-Aberturas, Govind Chandra, Luca Frattaruolo, Rodney Lacret, Thu H. Pham, Natalia M. Vior, Tom H. Eyles, Andrew W. Truman
    bioRxiv 494286; doi: https://doi.org/10.1101/494286
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  • Large-scale analyses of human microbiomes reveal thousands of small, novel genes and their predicted functions
    Hila Sberro, Nicholas Greenfield, Georgios Pavlopoulos, Nikos Kyrpides, Ami S. Bhatt
    bioRxiv 494179; doi: https://doi.org/10.1101/494179
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  • Correlation between the oral microbiome and brain resting state connectivity in smokers
    Dongdong Lin, Kent E. Hutchison, Salvador Portillo, Victor Vegara, Jarrod M. Ellingson, Jingyu Liu, Kenneth S. Krauter, Amanda Carroll-Portillo, Vince D. Calhoun
    bioRxiv 444612; doi: https://doi.org/10.1101/444612
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  • Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set
    Zhirong Zhao, Guohe Huang, Mingyuan Wang, Nan Zhou, Shishi He, Chenyuan Dang, Jiawen Wang, Maosheng Zheng
    bioRxiv 492488; doi: https://doi.org/10.1101/492488
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  • Microbial dispersal limitation to isolated soil habitats in the McMurdo Dry Valleys of Antarctica
    Stephen D.J. Archer, Kevin C. Lee, Tancredi Caruso, Teruya Maki, Charles K. Lee, Don A. Cowan, Fernando T. Maestre, Stephen B. Pointing
    bioRxiv 493411; doi: https://doi.org/10.1101/493411
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  • Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the Foot-and-Mouth Disease Virus capsid
    Luca Ferretti, Eva Pérez-Martín, Fuquan Zhang, François Maree, Lin-Mari de Klerk-Lorist, Louis van Schalkwykc, Nicholas D Juleff, Bryan Charleston, Paolo Ribeca
    bioRxiv 271239; doi: https://doi.org/10.1101/271239
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  • Phylogenetic measures of indel rate variation among the HIV-1 group M subtypes
    John Palmer, Art FY Poon
    bioRxiv 494344; doi: https://doi.org/10.1101/494344
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  • Comparison of microbiome and culture techniques for determination of gastrointestinal microbial communities in ceca of chickens
    Kim M. Wilson, Whitney N. Briggs, Audrey F. Duff, Kaylin M. Chasser, Xiaolun Sun, Lisa R. Bielke
    bioRxiv 494781; doi: https://doi.org/10.1101/494781
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  • A new framework for the study of apicomplexan diversity across environments
    Javier del Campo, Thierry Heger, Raquel Rodríguez-Martínez, Alexandra Z. Worden, Thomas A. Richards, Ramon Massana, Patrick J. Keeling
    bioRxiv 494880; doi: https://doi.org/10.1101/494880
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