Microbiology

Phylogenetic and functional substrate specificity for endolithic microbial communities in hyper-arid environments
Alexander Crits-Christoph, Courtney K. Robinson, Bing Ma, Jacques Ravel, Jacek Wierzchos, Carmen Ascaso, Octavio Artieda, Virginia Souza-Egipsy, M. Cristina Casero, Jocelyne DiRuggiero

bioRxiv 033340; doi: https://doi.org/10.1101/033340

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A highly diverse, desert-like microbial biocenosis on solar panels in a Mediterranean city
Pedro Dorado-Morales, Cristina Vilanova, Juli Peretó, Franscisco M. Codoñer, Daniel Ramón, Manuel Porcar

bioRxiv 029660; doi: https://doi.org/10.1101/029660

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Revolutionising Public Health Reference Microbiology using Whole Genome Sequencing: Salmonella as an exemplar
Philip Ashton, Satheesh Nair, Tansy Peters, Rediat Tewolde, Martin Day, Michel Doumith, Jonathan Green, Claire Jenkins, Anthony Underwood, Catherine Arnold, Elizabeth de Pinna, Tim Dallman, Kathie Grant

bioRxiv 033225; doi: https://doi.org/10.1101/033225

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The limitations of in vitro experimentation in understanding biofilms and chronic infection
Aled E. L. Roberts, Kasper N. Kragh, Thomas Bjarnsholt, Stephen P. Diggle

bioRxiv 032987; doi: https://doi.org/10.1101/032987

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Exopolysaccharide biosynthetic glycoside hydrolases can be utilized to disrupt and prevent Pseudomonas aeruginosa biofilms
Perrin Baker, Preston J. Hill, Brendan D. Snarr, Noor Alnabelseya, Mathew J. Pestrak, Mark J. Lee, Laura K. Jennings, John Tam, Roman Melnyk, Matthew R. Parsek, Donald C. Sheppard, Daniel J. Wozniak, P. Lynne Howell

bioRxiv 032714; doi: https://doi.org/10.1101/032714

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Spread of the pandemic Zika virus lineage is associated with NS1 codon usage adaptation in humans
Caio César de Melo Freire, Atila Iamarino, Daniel Ferreira de Lima Neto, Amadou Alpha Sall, Paolo Marinho de Andrade Zanotto

bioRxiv 032839; doi: https://doi.org/10.1101/032839

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EcOH: In silico serotyping of E. coli from short read data
Danielle J. Ingle, Mary Valcanis, Alex Kuzevski, Marija Tauschek, Michael Inouye, Tim Stinear, Myron M. Levine, Roy M. Robins-Browne, Kathryn E. Holt

bioRxiv 032151; doi: https://doi.org/10.1101/032151

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Scan-o-matic: high-resolution microbial phenomics at a massive scale
Martin Zackrisson, Johan Hallin, Lars-Göran Ottosson, Peter Dahl, Esteban Fernandez-Parada, Erik Ländström, Luciano Fernandez-Ricaud, Petra Kaferle, Andreas Skyman, Stig Omholt, Uros Petrovic, Jonas Warringer, Anders Blomberg

bioRxiv 031443; doi: https://doi.org/10.1101/031443

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Identification of protein secretion systems in bacterial genomes
Sophie S Abby, Jean Cury, Julien Guglielmini, Bertrand Néron, Marie Touchon, Eduardo PC Rocha

bioRxiv 031039; doi: https://doi.org/10.1101/031039

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A computational model of inhibition of HIV-1 by interferon-alpha
Edward P Browne, Benjamin Letham, Cynthia Rudin

bioRxiv 031005; doi: https://doi.org/10.1101/031005

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Microbiology

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