Synthetic Biology

ICOR: Improving codon optimization with recurrent neural networks
Rishab Jain, Aditya Jain, Elizabeth Mauro, Kevin LeShane, Douglas Densmore

bioRxiv 2021.11.08.467706; doi: https://doi.org/10.1101/2021.11.08.467706 New Results

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Thermodynamic Constraints on Electromicrobial Protein Production
Lucas Wise, Sabrina Marecos, Katie Randolph, Eric Nshimyumukiza, Mohamed Hassan, Jacob Strouse, Farshid Salimijazi, Buz Barstow

bioRxiv 2021.11.22.469619; doi: https://doi.org/10.1101/2021.11.22.469619 New Results

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Re-introduction of endogenous pathways for propionyl-CoA, 1-propanol and propionate formation in Escherichia coli
Thai Le

bioRxiv 2021.11.21.469472; doi: https://doi.org/10.1101/2021.11.21.469472 New Results

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A protein microarray-based in vitro transglutaminase assay platform for epitope mapping and peptide discovery: implication for transglutaminase-mediated immunodominant determination
Chen Liu

bioRxiv 2021.05.12.443622; doi: https://doi.org/10.1101/2021.05.12.443622 New Results

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Nonenzymatic loop-closing ligation generates RNA hairpins and is a template-free way to assemble functional RNAs
L.-F. Wu, Z. Liu, S. J. Roberts, M. Su, J. W. Szostak, J. D. Sutherland

bioRxiv 2021.11.19.469337; doi: https://doi.org/10.1101/2021.11.19.469337 New Results

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From sequence to yield: deep learning for protein production systems
Evangelos-Marios Nikolados, Oisin Mac Aodha, Guillaume Cambray, Diego A. Oyarzún

bioRxiv 2021.11.18.468948; doi: https://doi.org/10.1101/2021.11.18.468948 New Results

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The Functional Nanopore Screen: A Versatile High-throughput Assay to Study and Engineer Protein Nanopores in Escherichia coli
Wadim Weber, Markus Roeder, Tobias Probanowski, Jie Yang, Helal Abujubara, Heinz Koeppl, Alesia Tietze, Viktor Stein

bioRxiv 2021.04.20.440580; doi: https://doi.org/10.1101/2021.04.20.440580 New Results

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Activating silent glycolysis bypasses in Escherichia coli
Camillo Iacometti, Katharina Marx, Maria Hönick, Viktoria Biletskaia, Helena Schulz-Mirbach, Ari Satanowski, Beau Dronsella, Valérie A. Delmas, Anne Berger, Ivan Dubois, Madeleine Bouzon, Volker Döring, Elad Noor, Arren Bar-Even, Steffen N. Lindner

bioRxiv 2021.11.18.468982; doi: https://doi.org/10.1101/2021.11.18.468982 New Results

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De novo designed transmembrane domains tune engineered receptor functions
Assaf Elazar, Nicholas J. Chandler, Ashleigh S. Davey, Jonathan Y. Weinstein, Julie V. Nguyen, Raphael Trenker, Ryan S. Cross, Misty R. Jenkins, Melissa J. Call, Matthew E. Call, Sarel J. Fleishman

bioRxiv 2020.07.26.221598; doi: https://doi.org/10.1101/2020.07.26.221598 New Results

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Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors
Shaunak Kar, Yogendra Bordiya, Nestor Rodriguez, Junghyun Kim, Elizabeth C. Gardner, Jimmy Gollihar, Sibum Sung, Andrew D. Ellington

bioRxiv 2021.11.16.468903; doi: https://doi.org/10.1101/2021.11.16.468903 New Results

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Synthetic Biology

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