Synthetic Biology

Genomically recoded Escherichia coli with optimized functional phenotypes
Colin Hemez, Kyle Mohler, Felix Radford, Jack Moen, Jesse Rinehart, Farren J. Isaacs

bioRxiv 2024.08.29.610322; doi: https://doi.org/10.1101/2024.08.29.610322

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Design of diverse, functional mitochondrial targeting sequences across eukaryotic organisms using variational autoencoder
Aashutosh Girish Boob, Shih-I Tan, Airah Zaidi, Nilmani Singh, Xueyi Xue, Shuaizhen Zhou, Teresa A. Martin, Li-Qing Chen, Huimin Zhao

bioRxiv 2024.08.28.610205; doi: https://doi.org/10.1101/2024.08.28.610205

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Optimizing Plant Biofactories: Enhancing Recombinant Protein Production in Nicotiana benthamiana through Phytoplasma Effectors
Md Saifur Rahman, Marie-Claire Goulet, Dominique Michaud

bioRxiv 2024.08.29.610350; doi: https://doi.org/10.1101/2024.08.29.610350

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De novo-designed minibinders expand the synthetic biology sensing repertoire
Zara Y. Weinberg, Sarah S. Soliman, Matthew S. Kim, Devan H. Shah, Irene P. Chen, Melanie Ott, Wendell A. Lim, Hana El-Samad

bioRxiv 2024.01.12.575267; doi: https://doi.org/10.1101/2024.01.12.575267

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Engineering Intercellular Communication using M13 Phagemid and CRISPR-based Gene Regulation for Multicellular Computing in Escherichia coli
Hadiastri Kusumawardhani, Florian Zoppi, Roberto Avendaño, Yolanda Schaerli

bioRxiv 2024.08.28.610043; doi: https://doi.org/10.1101/2024.08.28.610043

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Phase Separation-based Antiviral Decoy Particles as Basis for Programmable Broad-spectrum Therapeutics
Or Willinger, Naor Granik, Sarah Goldberg, Roee Amit

bioRxiv 2024.08.28.610020; doi: https://doi.org/10.1101/2024.08.28.610020

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Reusing excess staple oligonucleotides for economical production of DNA origami
Giorgia Isinelli, Christopher M. Wintersinger, Pascal Lill, Olivia J. Young, Jie Deng, William M. Shih, Yang C. Zeng

bioRxiv 2024.08.27.609958; doi: https://doi.org/10.1101/2024.08.27.609958

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A molecular proximity sensor based on an engineered, dual-component guide RNA
Junhong Choi, Wei Chen, Hanna Liao, Xiaoyi Li, Jay Shendure

bioRxiv 2023.08.14.553235; doi: https://doi.org/10.1101/2023.08.14.553235

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Cargo quantification of functionalized DNA origami for therapeutic application
Olivia J. Young, Hawa Dembele, Anjali Rajwar, Ick Chan Kwon, Ju Hee Ryu, William M. Shih, Yang C. Zeng

bioRxiv 2024.08.27.609963; doi: https://doi.org/10.1101/2024.08.27.609963

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Expanding the biotechnological scope of metabolic sensors through computation-aided designs
Enrico Orsi, Helena Schulz-Mirbach, Charles A. R. Cotton, Ari Satanowski, Henrik M. Petri, Susanne L. Arnold, Natalia Grabarczyk, Rutger Verbakel, Karsten S. Jensen, Stefano Donati, Nicole Paczia, Timo Glatter, Andreas M. Küffner, Tanguy Chotel, Farah Schillmüller, Alberto De Maria, Hai He, Steffen N. Lindner, Elad Noor, Arren Bar-Even, Tobias J. Erb, Pablo I. Nikel

bioRxiv 2024.08.23.609350; doi: https://doi.org/10.1101/2024.08.23.609350

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Synthetic Biology

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