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  • SingleCellGGM enables gene expression program identification from single-cell transcriptomes and facilitates universal cell label transfer
    Yupu Xu, Yuzhou Wang, Shisong Ma
    bioRxiv 2023.02.05.526424; doi: https://doi.org/10.1101/2023.02.05.526424 New Results
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  • Extended fractional-polynomial generalizations of diffusion and Fisher-KPP equations on directed networks: Modeling neurodegenerative progression
    Arsalan Rahimabadi, Habib Benali
    bioRxiv 2023.02.04.527149; doi: https://doi.org/10.1101/2023.02.04.527149 New Results
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  • Mathematically mapping the network of cells in the tumor microenvironment
    Mike van Santvoort, Óscar Lapuente-Santana, Francesca Finotello, Pim van der Hoorn, Federica Eduati
    bioRxiv 2023.02.03.526946; doi: https://doi.org/10.1101/2023.02.03.526946 New Results
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  • Spatiotemporal coordination at the maternal-fetal interface promotes trophoblast invasion and vascular remodeling in the first half of human pregnancy
    Shirley Greenbaum, Inna Averbukh, Erin Soon, Gabrielle Rizzuto, Alex Baranski, Noah F. Greenwald, Adam Kagel, Marc Bosse, Eleni G. Jaswa, Zumana Khair, Shirley Kwok, Shiri Warshawsky, Hadeesha Piyadasa, Geneva Miller, Morgan Schwartz, Will Graf, David Van Valen, Virginia D. Winn, Travis Hollmann, Leeat Keren, Matt van de Rijn, Michael Angelo
    bioRxiv 2021.09.08.459490; doi: https://doi.org/10.1101/2021.09.08.459490 New Results
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  • Consensus tissue domain detection in spatial multi-omics data using MILWRM
    Harsimran Kaur, Cody N. Heiser, Eliot T. McKinley, Lissa Ventura-Antunes, Coleman R. Harris, Joseph T. Roland, Martha J. Shrubsole, Robert J. Coffey, Ken S. Lau, Simon Vandekar
    bioRxiv 2023.02.02.526900; doi: https://doi.org/10.1101/2023.02.02.526900 New Results
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  • Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference
    Andreas Tjärnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
    bioRxiv 2023.02.02.526909; doi: https://doi.org/10.1101/2023.02.02.526909 New Results
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  • Systematic identification of structure-specific protein–protein interactions
    Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A. Cowley, Luise Nagel, Basavraj Khanppnavar, Pedro Beltrao, Volodymyr M. Korkhov, Roland Riek, Natalie de Souza, Paola Picotti
    bioRxiv 2023.02.01.522707; doi: https://doi.org/10.1101/2023.02.01.522707 New Results
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  • Low dimensionality of phenotypic space as an emergent property of coordinated teams in biological regulatory networks
    Kishore Hari, Pradyumna Harlapur, Aashna Saxena, Aishwarya Girish, Herbert Levine, Mohit Kumar Jolly
    bioRxiv 2023.02.03.526930; doi: https://doi.org/10.1101/2023.02.03.526930 New Results
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  • spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape
    Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A. A. Castro, A. Gordon Robertson, Dieter Saur, Markus List
    bioRxiv 2022.03.29.486212; doi: https://doi.org/10.1101/2022.03.29.486212 New Results
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  • Climate, caribou and human needs linked by analysis of Indigenous and scientific knowledge
    Catherine A. Gagnon, Sandra Hamel, Don E. Russell, James Andre, Annie Buckle, David Haogak, Jessi Pascal, Esau Schafer, Todd Powell, Michael Y. Svoboda, Dominique Berteaux
    bioRxiv 2023.02.01.526335; doi: https://doi.org/10.1101/2023.02.01.526335 New Results
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