Systems Biology

An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration
Matthew Joseph Leventhal, Camila A Zanella, Byunguk Kang, Jiajie Peng, David Gritsch, Zhixiang Liao, Hassan Bukhari, Tao Wang, Ping-Chieh Pao, Serwah Danquah, Joseph Benetatos, Ralda Nehme, Samouil Farhi, Li-Huei Tsai, Xianjun Dong, Clemens Scherzer, Mel B Feany, Ernest Fraenkel

bioRxiv 2024.03.17.585262; doi: https://doi.org/10.1101/2024.03.17.585262 New Results

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The genetic interaction map of the human solute carrier superfamily
Gernot Wolf, Philipp Leippe, Svenja Onstein, Ulrich Goldmann, Fabian Frommelt, Shao Thing Teoh, Enrico Girardi, Tabea Wiedmer, Giulio Superti-Furga

bioRxiv 2024.10.07.616442; doi: https://doi.org/10.1101/2024.10.07.616442 New Results

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HHIP's Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility
David Deritei, Wardatul Jannat Anamika, Xiaobo Zhou, Edwin K Silverman, Erzsebet Ravasz Regan, Kimberly Glass

bioRxiv 2024.09.05.611545; doi: https://doi.org/10.1101/2024.09.05.611545 New Results

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Evaluation of information flows in the RAS-MAPK system using transfer entropy measurements
Nobuhisa Umeki, Yoshiyuki Kabashima, Yasushi Sako

bioRxiv 2023.08.06.552214; doi: https://doi.org/10.1101/2023.08.06.552214 New Results

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Predicting The Pathway Involvement For All Pathway and Associated Compound Entries Defined in the Kyoto Encyclopedia of Gene and Genomes
Erik D. Huckvale, Hunter N.B. Moseley

bioRxiv 2024.10.05.616804; doi: https://doi.org/10.1101/2024.10.05.616804 New Results

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Insights into optimization of oleaginous fungi – genome-scale metabolic reconstruction and analysis of Umbelopsis sp. WA50703
Mikołaj Dziurzyński, Maksymilian E. Nowak, Maria Furman, Alicja Okrasińska, Julia Pawłowska, Marco Fondi

bioRxiv 2024.10.01.616082; doi: https://doi.org/10.1101/2024.10.01.616082 New Results

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Gum Arabic (Acacia senegal) enhances reproduction and modulates the microbiota-gut-brain axis of zebrafish in a sex-specific and dosage-dependent manner
Justin Abi Assaf, Jean-Charles de Coriolis, Alice May Godden, Eve Redhead, Jamie Bartram, Jayme Cohen-Krais, Karina Silova, Zoe Crighton, Gwenaelle Le Gall, Saber Sami, Sami Ahmed Khalid, Simone Immler

bioRxiv 2024.10.04.616708; doi: https://doi.org/10.1101/2024.10.04.616708 New Results

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Ultra-Fast Multi-Organ Proteomics Unveils Tissue-Specific Mechanisms of Drug Efficacy and Toxicity
Yun Xiong, Lin Tan, Wai-kin Chan, Eric S. Yin, Sri Ramya Donepudi, Jibin Ding, Bo Wei, Bao Tran, Sara Martinez, Iqbal Mahmud, Hamish I. Stewart, Daniel J. Hermanson, John N. Weinstein, Philip L. Lorenzi

bioRxiv 2024.09.25.615060; doi: https://doi.org/10.1101/2024.09.25.615060 New Results

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Systems genetic dissection of Alzheimer’s disease brain gene expression networks
Pinghan Zhao, Omar El Fadel, Anh Le, Carl Grant Mangleburg, Justin Dhindsa, Timothy Wu, Jinghan Zhao, Meichen Huang, Bismark Amoh, Aditi Sai Marella, Yarong Li, Nicholas T. Seyfried, Allan I. Levey, Zhandong Liu, Ismael Al-Ramahi, Juan Botas, Joshua M Shulman

bioRxiv 2024.10.04.616661; doi: https://doi.org/10.1101/2024.10.04.616661 New Results

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Deep learning-based image classification reveals heterogeneous execution of cell death fates during viral infection
Edoardo Centofanti, Alon Oyler-Yaniv, Jennifer Oyler-Yaniv

bioRxiv 2024.10.03.616527; doi: https://doi.org/10.1101/2024.10.03.616527 New Results

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Systems Biology

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