Systems Biology

A study of a diauxic growth experiment using an expanded dynamic flux balance framework
Emil Karlsen, Marianne Gylseth, Christian Schulz, Eivind Almaas

bioRxiv 2022.05.16.492165; doi: https://doi.org/10.1101/2022.05.16.492165 New Results

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Network Topology Metrics Explaining Enrichment of Hybrid Epithelial Mesenchymal Phenotypes in Metastasis
Mubasher Rashid, Kishore Hari, John Thampi, Nived Krishnan Santhosh, Mohit Kumar Jolly

bioRxiv 2022.05.16.492000; doi: https://doi.org/10.1101/2022.05.16.492000 New Results

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Carbon footprint of South Dakota dairy production system and assessment of mitigation options
Anna M. Naranjo, Heidi Sieverding, David Clay, Ermias Kebreab

bioRxiv 2022.05.16.492173; doi: https://doi.org/10.1101/2022.05.16.492173 New Results

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An Updated Gene Regulatory Network reconstruction of multidrug-resistant Pseudomonas aeruginosa CCBH4851
Márcia da Silva Chagas, Fernando Medeiros Filho, Marcelo Trindade dos Santos, Marcio Argollo de Menezes, Ana Paula D’Alincourt Carvalho-Assef, Fabricio Alves Barbosa da Silva

bioRxiv 2022.05.12.491685; doi: https://doi.org/10.1101/2022.05.12.491685 New Results

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Metabolic competition between lipid metabolism and histone methylation regulates sexual differentiation in human malaria parasites
Chantal T. Harris, Xinran Tong, Riward Campelo, Inês M. Marreiros, Leen N. Vanheer, Navid Nahiyaan, Vanessa A. Zuzarte-Luís, Kirk W. Deitsch, Maria M. Mota, Kyu Y. Rhee, Björn F.C. Kafsack

bioRxiv 2022.01.18.476397; doi: https://doi.org/10.1101/2022.01.18.476397 New Results

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FAMetA: a mass isotopologue-based tool for the comprehensive analysis of fatty acid metabolism
María Isabel Alcoriza-Balaguer, Juan Carlos García-Cañaveras, Marta Benet, Oscar Juan Vidal, Agustín Lahoz

bioRxiv 2022.05.11.491462; doi: https://doi.org/10.1101/2022.05.11.491462 New Results

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Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages
C. F. Rowlatt, M. A. J. Chaplain, D. J. Hughes, S. H. Gillespie, D. H. Dockrell, I. Johannessen, R. Bowness

bioRxiv 2022.05.06.490883; doi: https://doi.org/10.1101/2022.05.06.490883 New Results

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Transcriptional fluctuations govern the serum dependent cell cycle duration heterogeneities in Mammalian cells
Vinodhini Govindaraj, Subrot Sarma, Atharva Karulkar, Rahul Purwar, Sandip Kar

bioRxiv 2022.05.06.490879; doi: https://doi.org/10.1101/2022.05.06.490879 New Results

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Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topology
Ying Zhu, Kerem Can Akkaya, Diogo Borges Lima, Cong Wang, Martin Lehmann, Fan Liu

bioRxiv 2022.05.05.490733; doi: https://doi.org/10.1101/2022.05.05.490733 New Results

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Revisiting regulatory decoherence and phenotypic integration: accounting for temporal bias in co-expression analyses
Haoran Cai, David L. Des Marais

bioRxiv 2021.04.08.438389; doi: https://doi.org/10.1101/2021.04.08.438389 New Results

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Systems Biology

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