Systems Biology

Predicting bacterial growth conditions from mRNA and protein abundances
Mehmet Umut Caglar, Adam J Hockenberry, Claus O Wilke

bioRxiv 353433; doi: https://doi.org/10.1101/353433 New Results
Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite
Christian Lieven, Moritz Emanuel Beber, Brett G. Olivier, Frank T. Bergmann, Parizad Babaei, Jennifer A. Bartell, Lars M. Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta Elisabeth Ebert, Janaka N. Edirisinghe, Ronan M. T. Fleming, Beatriz Garcia-Jimenez, Wout van Helvoirt, Christopher Henry, Henning Hermjakob, Markus J. Herrgard, Hyun Uk Kim, Zachary King, Jasper Jan Koehorst, Steffen Klamt, Edda Klipp, Meiyappan Lakshmanan, Nicolas Le Novere, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E. Lewis, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Greg L. Medlock, Jonathan Monk, Jens Nielsen, Lars K. Nielsen, Juan Nogales, Intawat Nookaew, Osbaldo Resendis, Bernhard Palsson, Jason A. Papin, Kiran Raosaheb Patil, Nathan D. Price, Anne Richelle, Isabel Rocha, Peter Schaap, Rahuman S. Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaca, Jon Olav Vik, Judith A. Wodke, Joana C. Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang

bioRxiv 350991; doi: https://doi.org/10.1101/350991 New Results
Logical design of oral glucose ingestion pattern minimizing blood glucose in humans
Masashi Fujii, Yohei Murakami, Yasuaki Karasawa, Yohei Sumitomo, Suguru Fujita, Masanori Koyama, Shinsuke Uda, Hiroyuki Kubota, Hiroshi Inoue, Katsumi Konishi, Shigeyuki Oba, Shin Ishii, Shinya Kuroda

bioRxiv 352955; doi: https://doi.org/10.1101/352955 New Results
In silico modeling and simulation of neuroendocrine-immune modulation through adrenergic and 17β-estradiol receptors in lymphocytes show differential activation of cyclic adenosine monophosphate (cAMP)
Hannah Priyanka, Anand Thiyagaraj, Gokulnath Krithika, Lalji Hima, Waheeta Hopper, Srinivasan ThyagaRajan

bioRxiv 353185; doi: https://doi.org/10.1101/353185 Confirmatory Results
Linear stability analysis of morphodynamics during tissue regeneration in plants
Anne-Mieke Reijne, Gunnar Pruessner, Giovanni Sena

bioRxiv 350884; doi: https://doi.org/10.1101/350884 New Results
Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion
Jahir M Gutierrez, Amir Feizi, Shangzhong Li, Thomas B Kallehauge, Hooman Hefzi, Lise M Grav, Daniel Ley, Deniz B Hizal, Michael J Betenbaugh, Bjorn Voldborg, Helene F Kildegaard, Gyun M Lee, Bernhard O Palsson, Jens Nielsen, Nathan Lewis

bioRxiv 351387; doi: https://doi.org/10.1101/351387 New Results
Inferring Reaction Networks using Perturbation Data
Kiri Choi, Joseph Hellerstein, Steven Wiley, Herbert M Sauro

bioRxiv 351767; doi: https://doi.org/10.1101/351767 New Results
Multiple optimal phenotypes overcome redox and glycolytic intermediate metabolite imbalances in Escherichia coli pgi knockout evolutions
Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson

bioRxiv 342709; doi: https://doi.org/10.1101/342709 New Results
An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics
Ilias Angelidis, Lukas M Simon, Isis E Fernandez, Maximilian Strunz, Christoph H Mayr, Flavia R Greiffo, George Tsitsiridis, Elisabeth Graf, Tim M Strom, Oliver Eickelberg, Matthias Mann, Fabian J Theis, Herbert B Schiller

bioRxiv 351353; doi: https://doi.org/10.1101/351353 New Results
Growth adaptation of gnd and sdhCB Escherichia coli deletion strains diverges from a similar initial perturbation of the transcriptome
Douglas McCloskey, Sibei Xu, Troy E Sandberg, Elizabeth Brunk, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson

bioRxiv 342683; doi: https://doi.org/10.1101/342683 New Results

Systems Biology

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