Systems Biology

Principles of metabolome conservation in animals
Orsolya Liska, Gábor Boross, Charles Rocabert, Balázs Szappanos, Roland Tengölics, Balázs Papp

bioRxiv 2022.08.15.503737; doi: https://doi.org/10.1101/2022.08.15.503737 New Results

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Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome
Maria Zimmermann-Kogadeeva, Natasha A. Bencivenga-Barry, Michael Zimmermann, Peer Bork, Andrew L. Goodman

bioRxiv 2022.08.15.503927; doi: https://doi.org/10.1101/2022.08.15.503927 New Results

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Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging
Emin Onur Karakaslar, Neerja Katiyar, Muneer Hasham, Ahrim Youn, Siddhartha Sharma, Cheng-han Chung, Radu Marches, Ron Korstanje, Jacques Banchereau, Duygu Ucar

bioRxiv 2022.08.15.503978; doi: https://doi.org/10.1101/2022.08.15.503978 New Results

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Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells
Camille Ternet, Philipp Junk, Thomas Sevrin, Simona Catozzi, Giorgio Oliviero, Kieran Wynne, Christina Kiel

bioRxiv 2022.08.15.503960; doi: https://doi.org/10.1101/2022.08.15.503960 New Results

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The host transcriptional response to superinfection by influenza virus and streptococcus pneumonia
Ofir Cohn, Gal Yankovitz, Michal Mandelboim, Naama Peshes-Yaloz, Eran Bacharach, Irit Gat-Viks

bioRxiv 2022.08.15.503953; doi: https://doi.org/10.1101/2022.08.15.503953 New Results

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A guidance into the fungal metabolomic abyss: Network analysis for revealing relationships between exogenous compounds and their outputs
Muralikrishnan Gopalakrishnan Meena, Matthew J. Lane, Joanna Tannous, Alyssa A. Carrell, Paul E. Abraham, Richard J. Giannone, Jean-Michel Ané, Nancy P. Keller, Jesse L. Labbé, David Kainer, Daniel A. Jacobson, Tomás A. Rush

bioRxiv 2022.08.11.503656; doi: https://doi.org/10.1101/2022.08.11.503656 New Results

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Modular response analysis reformulated as a multilinear regression problem
Jean-Pierre Borg, Jacques Colinge, Patrice Ravel

bioRxiv 2022.08.11.503572; doi: https://doi.org/10.1101/2022.08.11.503572 New Results

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A Spatial Whole-Cell Model for Hepatitis B Viral Infection and Drug Interactions
Zhaleh Ghaemi, Oluwadara Nafiu, Emad Tajkhorshid, Martin Gruebele, Jianming Hu

bioRxiv 2022.06.01.494377; doi: https://doi.org/10.1101/2022.06.01.494377 New Results

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A Data-Driven Optimization Method for Coarse-Graining Gene Regulatory Networks
Cristian Caranica, Mingyang Lu

bioRxiv 2022.08.10.503498; doi: https://doi.org/10.1101/2022.08.10.503498 New Results

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Cellular and computational models reveal environmental and genetic interactions in MMUT-type methylmalonic aciduria
Charlotte Ramon, Florian Traversi, Céline Bürer, D. Sean Froese, Jörg Stelling

bioRxiv 2022.08.10.503435; doi: https://doi.org/10.1101/2022.08.10.503435 New Results

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Systems Biology

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