Systems Biology

SingleCellGGM enables gene expression program identification from single-cell transcriptomes and facilitates universal cell label transfer
Yupu Xu, Yuzhou Wang, Shisong Ma

bioRxiv 2023.02.05.526424; doi: https://doi.org/10.1101/2023.02.05.526424 New Results

Add to Selected Citations
Extended fractional-polynomial generalizations of diffusion and Fisher-KPP equations on directed networks: Modeling neurodegenerative progression
Arsalan Rahimabadi, Habib Benali

bioRxiv 2023.02.04.527149; doi: https://doi.org/10.1101/2023.02.04.527149 New Results

Add to Selected Citations
Mathematically mapping the network of cells in the tumor microenvironment
Mike van Santvoort, Óscar Lapuente-Santana, Francesca Finotello, Pim van der Hoorn, Federica Eduati

bioRxiv 2023.02.03.526946; doi: https://doi.org/10.1101/2023.02.03.526946 New Results

Add to Selected Citations
Spatiotemporal coordination at the maternal-fetal interface promotes trophoblast invasion and vascular remodeling in the first half of human pregnancy
Shirley Greenbaum, Inna Averbukh, Erin Soon, Gabrielle Rizzuto, Alex Baranski, Noah F. Greenwald, Adam Kagel, Marc Bosse, Eleni G. Jaswa, Zumana Khair, Shirley Kwok, Shiri Warshawsky, Hadeesha Piyadasa, Geneva Miller, Morgan Schwartz, Will Graf, David Van Valen, Virginia D. Winn, Travis Hollmann, Leeat Keren, Matt van de Rijn, Michael Angelo

bioRxiv 2021.09.08.459490; doi: https://doi.org/10.1101/2021.09.08.459490 New Results

Add to Selected Citations
Consensus tissue domain detection in spatial multi-omics data using MILWRM
Harsimran Kaur, Cody N. Heiser, Eliot T. McKinley, Lissa Ventura-Antunes, Coleman R. Harris, Joseph T. Roland, Martha J. Shrubsole, Robert J. Coffey, Ken S. Lau, Simon Vandekar

bioRxiv 2023.02.02.526900; doi: https://doi.org/10.1101/2023.02.02.526900 New Results

Add to Selected Citations
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference
Andreas Tjärnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau

bioRxiv 2023.02.02.526909; doi: https://doi.org/10.1101/2023.02.02.526909 New Results

Add to Selected Citations
Systematic identification of structure-specific protein–protein interactions
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A. Cowley, Luise Nagel, Basavraj Khanppnavar, Pedro Beltrao, Volodymyr M. Korkhov, Roland Riek, Natalie de Souza, Paola Picotti

bioRxiv 2023.02.01.522707; doi: https://doi.org/10.1101/2023.02.01.522707 New Results

Add to Selected Citations
Low dimensionality of phenotypic space as an emergent property of coordinated teams in biological regulatory networks
Kishore Hari, Pradyumna Harlapur, Aashna Saxena, Aishwarya Girish, Herbert Levine, Mohit Kumar Jolly

bioRxiv 2023.02.03.526930; doi: https://doi.org/10.1101/2023.02.03.526930 New Results

Add to Selected Citations
spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape
Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A. A. Castro, A. Gordon Robertson, Dieter Saur, Markus List

bioRxiv 2022.03.29.486212; doi: https://doi.org/10.1101/2022.03.29.486212 New Results

Add to Selected Citations
Climate, caribou and human needs linked by analysis of Indigenous and scientific knowledge
Catherine A. Gagnon, Sandra Hamel, Don E. Russell, James Andre, Annie Buckle, David Haogak, Jessi Pascal, Esau Schafer, Todd Powell, Michael Y. Svoboda, Dominique Berteaux

bioRxiv 2023.02.01.526335; doi: https://doi.org/10.1101/2023.02.01.526335 New Results

Add to Selected Citations

Systems Biology

Pages