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Systems Biology

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  • Global architecture of the nucleus in single cells by DNA seqFISH+ and multiplexed immunofluorescence
    Yodai Takei, Jina Yun, Noah Ollikainen, Shiwei Zheng, Nico Pierson, Jonathan White, Sheel Shah, Julian Thomassie, Chee-Huat Linus Eng, Mitchell Guttman, Guo-cheng Yuan, Long Cai
    bioRxiv 2020.11.29.403055; doi: https://doi.org/10.1101/2020.11.29.403055
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  • Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS Cov2 infection
    Piyush Nanda, Amit Ghosh
    bioRxiv 2020.11.29.402404; doi: https://doi.org/10.1101/2020.11.29.402404
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  • A systems based framework to computationally predict putative transcription factors and signaling pathways regulating glycan biosynthesis
    Theodore Groth, Sriram Neelamegham
    bioRxiv 2020.08.19.257956; doi: https://doi.org/10.1101/2020.08.19.257956
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  • Automated monitoring of animal behaviour with barcodes and convolutional neural networks
    Tim Gernat, Tobias Jagla, Beryl M. Jones, Martin Middendorf, Gene E. Robinson
    bioRxiv 2020.11.27.401760; doi: https://doi.org/10.1101/2020.11.27.401760
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  • Capturing the transcription factor interactome in response to sub-lethal insecticide exposure
    Victoria A Ingham, Sara Elg, Sanjay C Nagi, Frank Dondelinger
    bioRxiv 2020.11.26.399691; doi: https://doi.org/10.1101/2020.11.26.399691
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  • Robotic Search for Optimal Cell Culture in Regenerative Medicine
    Genki N. Kanda, Taku Tsuzuki, Motoki Terada, Noriko Sakai, Naohiro Motozawa, Tomohiro Masuda, Mitsuhiro Nishida, Chihaya T. Watanabe, Tatsuki Higashi, Shuhei A. Horiguchi, Taku Kudo, Motohisa Kamei, Genshiro A. Sunagawa, Kenji Matsukuma, Takeshi Sakurada, Yosuke Ozawa, Masayo Takahashi, Koichi Takahashi, Tohru Natsume
    bioRxiv 2020.11.25.392936; doi: https://doi.org/10.1101/2020.11.25.392936
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  • Cellular Synchronisation through Unidirectional and Phase-Gated Signalling
    Gregory Roth, Georgios Misailidis, Charisios D. Tsiairis
    bioRxiv 2020.11.26.399683; doi: https://doi.org/10.1101/2020.11.26.399683
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  • Constraint-based metabolic control analysis for rational strain engineering
    Sophia Tsouka, Meric Ataman, Tuure Hameri, Ljubisa Miskovic, Vassily Hatzimanikatis
    bioRxiv 2020.11.26.399576; doi: https://doi.org/10.1101/2020.11.26.399576
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  • ATP drives efficient terpene biosynthesis in marine thraustochytrids
    Aiqing Zhang, Kaya Mernitz, Chao Wu, Wei Xiong, Yaodong He, Guangyi Wang, Xin Wang
    bioRxiv 2020.11.20.391870; doi: https://doi.org/10.1101/2020.11.20.391870
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  • A neural-network framework for modelling auditory sensory cells and synapses
    Fotios Drakopoulos, Deepak Baby, Sarah Verhulst
    bioRxiv 2020.11.25.388546; doi: https://doi.org/10.1101/2020.11.25.388546
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