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  • Environmental gene regulatory influence networks in rice (Oryza sativa):response to water deficit, high temperature and agricultural environments
    Olivia Wilkins, Christoph Hafemeister, Anne Plessis, Meisha-Marika Holloway-Phillips, Gina M. Pham, Adrienne B. Nicotra, Glenn B. Gregorio, S.V. Krishna Jagadish, Endang M. Septiningsih, Richard Bonneau, Michael Purugganan
    bioRxiv 042317; doi: https://doi.org/10.1101/042317
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  • A Comparison of the Costs and Benefits of Bacterial Gene Expression
    Morgan N. Price, Kelly M. Wetmore, Adam M. Deutschbauer, Adam P. Arkin
    bioRxiv 038851; doi: https://doi.org/10.1101/038851
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  • The combination of the functionalities of feedback circuits is determinant for the number and size of attractors of molecular networks
    Eugenio Azpeitia, Stalin Muñoz, Daniel González-Tokman, Mariana Esther Martínez-Sánchez, Nathan Weinstein, Aurélien Naldi, Elena R. Álvarez-Buylla, David A Rosenblueth, Luis Mendoza
    bioRxiv 060608; doi: https://doi.org/10.1101/060608
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  • Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast
    Emanuel Gonçalves, Zrinka Raguz, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrao, Julio Saez-Rodriguez
    bioRxiv 057398; doi: https://doi.org/10.1101/057398
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  • Petri Net-Based Graphical and Computational Modelling of Biological Systems
    Alessandra Livigni, Laura O’Hara, Marta E. Polak, Tim Angus, Lee B. Smith, Tom C. Freeman
    bioRxiv 047043; doi: https://doi.org/10.1101/047043
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  • Mechanistic Modeling and Analysis of the Mammalian Unfolded Protein Response
    Anirikh Chakrabarti, Lina Aboulmouna, Jeffrey Varner
    bioRxiv 060020; doi: https://doi.org/10.1101/060020
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  • Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism
    Milan JA Van Hoek, Roeland MH Merks
    bioRxiv 059956; doi: https://doi.org/10.1101/059956
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  • A Novel Algorithm for the Maximal Fit Problem in Boolean Networks
    Guy Karlebach
    bioRxiv 056358; doi: https://doi.org/10.1101/056358
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  • Distinct Cellular States Determine Calcium Signaling Response
    Jason Yao, Roy Wollman
    bioRxiv 059287; doi: https://doi.org/10.1101/059287
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  • The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study
    M.E. Martinez-Sanchez, M. Hiriart, E. R. Alvarez-Buylla
    bioRxiv 058743; doi: https://doi.org/10.1101/058743
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