Systems Biology

Modeling and Analysis of Hormone and Mitogenic Signal Integration in Prostate Cancer
Katharine V. Rogers, Joseph A. Wayman, Ryan Tasseff, Caitlin Gee, Matthew P. DeLisa, Jeffrey D. Varner

bioRxiv 058552; doi: https://doi.org/10.1101/058552

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Thanatotranscriptome: genes actively expressed after organismal death
Alex E. Pozhitkov, Rafik Neme, Tomislav Domazet-Lošo, Brian G. Leroux, Shivani Soni, Diethard Tautz, Peter A. Noble

bioRxiv 058305; doi: https://doi.org/10.1101/058305

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Predicting Targeted Cancer Therapeutics
Aaron Wise, Murat Can Cobanoglu

bioRxiv 057901; doi: https://doi.org/10.1101/057901

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Tellurium: A Python Based Modeling and Reproducibility Platform for Systems Biology
Kiri Choi, J. Kyle Medley, Caroline Cannistra, Matthias König, Lucian Smith, Kaylene Stocking, Herbert M. Sauro

bioRxiv 054601; doi: https://doi.org/10.1101/054601

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Systems-level chromosomal parameters represent the suprachromosomal basis for a non-random chromosomal arrangement in human interphase nuclei
Sarosh N. Fatakia, Ishita S. Mehta, Basuthkar J. Rao

bioRxiv 052498; doi: https://doi.org/10.1101/052498

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JuPOETs: A Constrained Multiobjective Optimization Approach to Estimate Biochemical Model Ensembles in the Julia Programming Language
David Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T Butcher, Jeffrey D. Varner

bioRxiv 056044; doi: https://doi.org/10.1101/056044

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Detecting differential growth of microbial populations with Gaussian process regression
Peter D Tonner, Cynthia L Darnell, Barbara E Engelhardt, Amy K Schmid

bioRxiv 055186; doi: https://doi.org/10.1101/055186

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Personalized characterization of diseases using sample-specific networks
Xiaoping Liu, Yuetong Wang, Hongbin Ji, Kazuyuki Aihara, Luonan Chen

bioRxiv 042838; doi: https://doi.org/10.1101/042838

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Highly expressed proteins prefer less informative amino acids
Guang-Zhong Wang

bioRxiv 054981; doi: https://doi.org/10.1101/054981

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MAMMOTh: a new database for curated MAthematical Models of bioMOlecular sysTems
Fedor Kazantsev, Ilya Akberdin, Sergey Lashin, Natalia Ree, Vladimir Timonov, Alexander Ratushny, Tamara Khlebodarova, Vitaly Likhoshvai

bioRxiv 053652; doi: https://doi.org/10.1101/053652

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Systems Biology

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