Systems Biology

Modeling the Pancreatic Cancer Microenvironment in Search of Control Targets
Daniel Plaugher, David Murrugarra

bioRxiv 2021.05.04.442611; doi: https://doi.org/10.1101/2021.05.04.442611 New Results

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Cell Types of Origin in the Cell Free Transcriptome in Human Health and Disease
Sevahn K. Vorperian, Mira N. Moufarrej, Tabula Sapiens Consortium, Stephen R. Quake

bioRxiv 2021.05.05.441859; doi: https://doi.org/10.1101/2021.05.05.441859 New Results

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The self-regulated response of the Wnt pathway to an oncogenic mutation in β-catenin
Ana R Moshkovsky, Wenzhe Ma, Marc W Kirschner

bioRxiv 2021.05.05.442673; doi: https://doi.org/10.1101/2021.05.05.442673 New Results

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TISON: a next-generation multi-scale modeling theatre for in silico systems oncology
Mahnoor N Gondal, Muhammad U Sultan, Ammar Arif, Abdul Rehman, Hira A Awan, Zainab Arshad, Waleed Ahmed, Muhammad FA Chaudhary, Salaar Khan, Zain B Tanveer, Rida Nasir Butt, Risham Hussain, Huma Khawar, Bibi Amina, Rida Akbar, Fatima Abbas, Misha N Jami, Zainab Nasir, Osama S Shah, Hadia Hameed, Muhammad FA Butt, Ghulam Mustafa, Muhammad M Ahmad, Sameer Ahmed, Romena Qazi, Fayyaz Ahmed, Omer Ishaq, Syed W Nabi, Wim Vanderbauwhede, Bilal Wajid, Huma Shehwana, Emad Uddin, Muhammad Safdar, Irfan Javed, Muhammad Tariq, Amir Faisal, Safee U Chaudhary

bioRxiv 2021.05.04.442539; doi: https://doi.org/10.1101/2021.05.04.442539 New Results

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Daily rhythms in the transcriptomes of the human parasite Schistosoma mansoni
Kate A. Rawlinson, Adam J. Reid, Zhigang Lu, Patrick Driguez, Anna Wawer, Avril Coghlan, Geetha Sankaranarayanan, Sarah Kay Buddenborg, Carmen Diaz Soria, Catherine McCarthy, Nancy Holroyd, Mandy Sanders, Karl Hoffmann, David Wilcockson, Gabriel Rinaldi, Matt Berriman

bioRxiv 2021.04.21.440693; doi: https://doi.org/10.1101/2021.04.21.440693 New Results

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Inferring Gene Regulatory Networks from Single Cell RNA-seq Temporal Snapshot Data Requires Higher Order Moments
N. Alexia Raharinirina, Felix Peppert, Max von Kleist, Christof Schütte, Vikram Sunkara

bioRxiv 2021.05.05.440762; doi: https://doi.org/10.1101/2021.05.05.440762 New Results

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Genetic network regulating visual acuity makes limited contribution to visually guided eye emmetropization
Tatiana V. Tkatchenko, Andrei V. Tkatchenko

bioRxiv 2021.05.04.442661; doi: https://doi.org/10.1101/2021.05.04.442661 New Results

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Single-cell gene regulatory network inference at scale: The Inferelator 3.0
Claudia Skok Gibbs, Christopher A Jackson, Giuseppe-Antonio Saldi, Aashna Shah, Andreas Tjärnberg, Aaron Watters, Nicholas De Veaux, Konstantine Tchourine, Ren Yi, Tymor Hamamsy, Dayanne M Castro, Nicholas Carriero, David Gresham, Emily R Miraldi, Richard Bonneau

bioRxiv 2021.05.03.442499; doi: https://doi.org/10.1101/2021.05.03.442499 New Results

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Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile
Mario L. Arrieta-Ortiz, Selva Rupa Christinal Immanuel, Serdar Turkarslan, Wei Ju Wu, Brintha P. Girinathan, Jay N. Worley, Nicholas DiBenedetto, Olga Soutourina, Johann Peltier, Bruno Dupuy, Lynn Bry, Nitin S. Baliga

bioRxiv 2020.09.14.297382; doi: https://doi.org/10.1101/2020.09.14.297382 New Results

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Identification of Kinases Activated by Multiple Pro-Angiogenic Growth Factors
Jonathan Scott Gruver, Scott Rata, Leonid Peshkin, Marc Kirschner

bioRxiv 2021.02.28.433132; doi: https://doi.org/10.1101/2021.02.28.433132 New Results

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Systems Biology

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