Systems Biology

Modeling a gene regulatory network of EMT hybrid states for mouse embryonic skin cells
Dan Ramirez, Vivek Kohar, Ataur Katebi, Mingyang Lu

bioRxiv 799908; doi: https://doi.org/10.1101/799908 New Results

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Transcriptomic signatures predict regulators of drug synergy and clinical regimen efficacy against Tuberculosis
Shuyi Ma, Suraj Jaipalli, Jonah Larkins-Ford, Jenny Lohmiller, Bree B. Aldridge, David R. Sherman, Sriram Chandrasekaran

bioRxiv 800334; doi: https://doi.org/10.1101/800334 New Results

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Random Parametric Perturbations of Gene Regulatory Circuit Uncover State Transitions in Cell Cycle
Ataur Katebi, Vivek Kohar, Mingyang Lu

bioRxiv 799965; doi: https://doi.org/10.1101/799965 New Results

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Network organization of antibody interactions in sequence and structure space: the RADARS model
József Prechl

bioRxiv 438804; doi: https://doi.org/10.1101/438804 New Results

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Systems-level physiology of the human red blood cell is computed from metabolic and macromolecular mechanisms
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson

bioRxiv 797258; doi: https://doi.org/10.1101/797258 New Results

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A roadblock-and-kill model explains the dynamical response to the DNA-targeting antibiotic ciprofloxacin
Nikola Ojkic, Elin Lilja, Susana Direito, Angela Dawson, Rosalind J. Allen, Bartlomiej Waclaw

bioRxiv 791145; doi: https://doi.org/10.1101/791145 New Results

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Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease
Agnieszka B. Wegrzyn, Katharina Herzog, Albert Gerding, Marcel Kwiatkowski, Justina C. Wolters, Amalia M. Dolga, Alida E. M. van Lint, Ronald J. A. Wanders, Hans R. Waterham, Barbara M. Bakker

bioRxiv 776575; doi: https://doi.org/10.1101/776575 New Results

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A Quantitative Proteome Map of the Human Body
Lihua Jiang, Meng Wang, Shin Lin, Ruiqi Jian, Xiao Li, Joanne Chan, Huaying Fang, Guanlan Dong, GTEx Consortium, Hua Tang, Michael P. Snyder

bioRxiv 797373; doi: https://doi.org/10.1101/797373 New Results

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Phenotype-Based Probabilistic Analysis of Heterogeneous Responses to Cancer Drugs and Their Combination Efficacy
Natacha Comandante-Lou, Mehwish Khaliq, Divya Venkat, Mohan Manikkam, Mohammad Fallahi-Sichani

bioRxiv 797225; doi: https://doi.org/10.1101/797225 New Results

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Genome-scale Model Constrained by Proteomics Reveals Metabolic Rearrangements in the Heterologous Host Streptomyces coelicolor
Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh-Yazdi, Chao Du, Kay Nieselt, Eivind Almaas, Alexander Wentzel, Eduard Kerkhoven

bioRxiv 796722; doi: https://doi.org/10.1101/796722 New Results

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Systems Biology

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