Systems Biology

Revisiting tradeoffs in Rubisco kinetic parameters
Avi I Flamholz, Noam Prywes, Uri Moran, Dan Davidi, Yinon Bar-On, Luke Oltrogge, Rui Alves, David Savage, Ron Milo

bioRxiv 470021; doi: https://doi.org/10.1101/470021 New Results
Quantifying bacterial fitness in intracellular dynamics
Francisco F. S. Paupério, Erida Gjini

bioRxiv 539163; doi: https://doi.org/10.1101/539163 New Results
Computational analysis of molecular networks using spectral graph theory, complexity measures and information theory
Chien-Hung Huang, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng

bioRxiv 536318; doi: https://doi.org/10.1101/536318 New Results
Modeling microbial communities using biochemical resource allocation analysis
Suraj Sharma, Ralf Steuer

bioRxiv 537779; doi: https://doi.org/10.1101/537779 New Results
Time Series Experiment Design Under One-Shot Sampling: The Importance of Condition Diversity
Xiaohan Kang, Bruce Hajek, Faqiang Wu, Yoshie Hanzawa

bioRxiv 537548; doi: https://doi.org/10.1101/537548 New Results
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks
Ermin Hodzic, Raunak Shrestha, Kaiyuan Zhu, Kuoyuan Cheng, Colin C Collins, S. Cenk Sahinalp

bioRxiv 369850; doi: https://doi.org/10.1101/369850 New Results
Molecular Dynamics simulations of Alzheimer's variants, R47H and R62H, in TREM2 provide evidence for structural alterations behind functional changes
Georgina Elizabeth Menzies, Rebecca Sims, Julie Williams

bioRxiv 536540; doi: https://doi.org/10.1101/536540 New Results
Multi-omics profiling of CHO parental hosts reveals cell line-specific variations in bioprocessing traits
Meiyappan Lakshmanan, Yee Jiun Kok, Alison P. Lee, Sarantos Kyriakopoulos, Hsueh Lee Lim, Gavin Teo, Swan Li Poh, Wen Qin Tang, Jongkwang Hong, Andy Hee-Meng Tan, Xuezhi Bi, Ying Swan Ho, Peiqing Zhang, Say Kong Ng, Dong-Yup Lee

bioRxiv 532150; doi: https://doi.org/10.1101/532150 New Results
Re-curation and Rational Enrichment of Knowledge Graphs in Biological Expression Language
Charles Hoyt, Daniel Domingo-Fernandez, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John Bachman, Benjamin Gyori, Patrick Greene, Martin Hofmann-Apitius

bioRxiv 536409; doi: https://doi.org/10.1101/536409 New Results
TEX-FBA: A constraint-based method for integrating gene expression, thermodynamics, and metabolomics data into genome-scale metabolic models
Vikash Pandey, Daniel Hernandez Gardiol, Anush Chiappino Pepe, Vassily Hatzimanikatis

bioRxiv 536235; doi: https://doi.org/10.1101/536235 New Results

Systems Biology

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