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  • Dissection of the contribution of regulation mode to the properties of feedforward and feedback gene regulatory motifs
    Bharat Ravi Iyengar, Beena Pillai, K.V. Venkatesh, Chetan J. Gadgil
    bioRxiv 065698; doi: https://doi.org/10.1101/065698
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  • Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis
    Julia Steinberg, Graham R. S. Ritchie, Theodoros I. Roumeliotis, Raveen L. Jayasuriya, Roger A. Brooks, Abbie L. A. Binch, Karan M. Shah, Rachael Coyle, Mercedes Pardo, Christine L. Le Maitre, Yolande F. M. Ramos, Rob G. H. H. Nelissen, Ingrid Meulenbelt, Andrew W. McCaskie, Jyoti S. Choudhary, J. Mark Wilkinson, Eleftheria Zeggini
    bioRxiv 038067; doi: https://doi.org/10.1101/038067
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  • History of Antibiotic Adaptation Influences Microbial Evolutionary Dynamics During Subsequent Treatment
    Phillip Yen, Jason A. Papin
    bioRxiv 089334; doi: https://doi.org/10.1101/089334
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  • NaviCom: A web application to create interactive molecular network portraits using multi-level omics data
    Mathurin Dorel, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein
    bioRxiv 089367; doi: https://doi.org/10.1101/089367
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  • SINCERITIES: Inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles
    Nan Papili Gao, S.M. Minhaz Ud-Dean, Rudiyanto Gunawan
    bioRxiv 089110; doi: https://doi.org/10.1101/089110
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  • Scalable parameter estimation for genome-scale biochemical reaction networks
    Fabian Fröhlich, Barbara Kaltenbacher, Fabian J. Theis, Jan Hasenauer
    bioRxiv 089086; doi: https://doi.org/10.1101/089086
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  • Estimating Drivers of Cell State Transitions Using Gene Regulatory Network Models
    Daniel Schlauch, Kimberly Glass, Craig P. Hersh, Edwin K. Silverman, John Quackenbush
    bioRxiv 089003; doi: https://doi.org/10.1101/089003
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  • High temporal resolution of gene expression dynamics in developing mouse embryonic stem cells
    Brian S. Gloss, Bethany Signal, Seth W. Cheetham, Franziska Gruhl, Dominik Kaczorowski, Andrew C. Perkins, Marcel E. Dinger
    bioRxiv 084442; doi: https://doi.org/10.1101/084442
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  • Genome-scale transcriptional regulatory network models for the mouse and human striatum predict roles for SMAD3 and other transcription factors in Huntington’s disease
    Seth A. Ament, Jocelynn R. Pearl, Robert M. Bragg, Peter J. Skene, Sydney R. Coffey, Dani E. Bergey, Christopher L. Plaisier, Vanessa C. Wheeler, Marcy E. MacDonald, Nitin S. Baliga, Jim Rosinski, Leroy E. Hood, Jeffrey B. Carroll, Nathan D. Price
    bioRxiv 087114; doi: https://doi.org/10.1101/087114
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  • Impact of Zygosity in Bimodal Phenotype Distributions
    Thomas Holst-Hansen, Elena Abad, Aura Muntasell, Miguel López-Botet, Mogens H. Jensen, Ala Trusina, Jordi Garcia-Ojalvo
    bioRxiv 086215; doi: https://doi.org/10.1101/086215
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