Systems Biology

Natural Variation in Preparation for Nutrient Depletion Reveals a Cost-Benefit Tradeoff
Jue Wang, Esha Atolia, Bo Hua, Yonatan Savir, Renan Escalante-Chong, Michael Springer

bioRxiv 011148; doi: https://doi.org/10.1101/011148

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Stochasticity and negative feedback lead to pulsed dynamics and distinct gene activity patterns
Samuel Zambrano, Marco E. Bianchi, Alessandra Agresti, Nacho Molina

bioRxiv 011734; doi: https://doi.org/10.1101/011734

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On the scope and limitations of baker’s yeast as a model organism for studying human tissue-specific pathways
Shahin Mohammadi, Baharak Saberidokht, Shankar Subramaniam, Ananth Grama

bioRxiv 011858; doi: https://doi.org/10.1101/011858

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Modelling Reactions Catalysed by Carbohydrate-Active Enzymes
Önder Kartal, Oliver Ebenhöh

bioRxiv 008615; doi: https://doi.org/10.1101/008615 Confirmatory Results

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Modes of interaction between individuals dominate the topologies of real world networks
Insuk Lee, Eiru Kim, Edward M. Marcotte

bioRxiv 011288; doi: https://doi.org/10.1101/011288

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Reverse enGENEering of regulatory networks from Big Data: a guide for a biologist
Xiaoxi Dong Postdoctoral scholar, Anatoly Yambartsev Assistant professor, Stephen Ramsey Assistant professor, Lina Thomas Graduate student, Natalia Shulzhenko Assistant professor, Andrey Morgun Assistant professor

bioRxiv 011056; doi: https://doi.org/10.1101/011056

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Phenotypic heterogeneity implements a game theoretic mixed strategy in a clonal microbial population
David Healey, Jeff Gore

bioRxiv 011049; doi: https://doi.org/10.1101/011049

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Cooperative development of logical modelling standards and tools with CoLoMoTo
Aurélien Naldi, Pedro T. Monteiro, Christoph Müssel, the Consortium for Logical Models and Tools, Hans A. Kestler, Denis Thieffry, Ioannis Xenarios, Julio Saez-Rodriguez, Tomas Helikar, Claudine Chaouiya

bioRxiv 010504; doi: https://doi.org/10.1101/010504 Confirmatory Results

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Predicting growth conditions from internal metabolic fluxes in an in-Silico model of E. Coli
Viswanadham Sridhara, Austin G. Meyer, Piyush Rai, Jeffrey E. Barrick, Pradeep Ravikumar, Daniel Segrè, Claus O. Wilke

bioRxiv 002287; doi: https://doi.org/10.1101/002287

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Extensive Decoupling of Metabolic Genes in Cancer
Ed Reznik, Chris Sander

bioRxiv 008946; doi: https://doi.org/10.1101/008946

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Systems Biology

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