Systems Biology

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing
Weihua Guo, You (Eric) Xu, Xueyang Feng

bioRxiv 135574; doi: https://doi.org/10.1101/135574

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Systemic activation coordinates the heat shock response of the insulin/IGF-1 pathway in Caenorhabditis elegans
Ronen B Kopito, Kathie Watkins, Erel Levine

bioRxiv 131375; doi: https://doi.org/10.1101/131375

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A space-jump derivation for non-local models of cell-cell adhesion and non-local chemotaxis
Andreas Buttenschön, Thomas Hillen, Alf Gerisch, Kevin J. Painter

bioRxiv 093617; doi: https://doi.org/10.1101/093617

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Mathematical model for Plant-Insect interaction with dynamic response to PAD4-BIK1 interaction and effect of BIK1 inhibition
Sanjay, Sabahuddin Ahmad, M. I. Siddiqi, Khalid Raza

bioRxiv 134619; doi: https://doi.org/10.1101/134619

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A systematic atlas of chaperome deregulation topologies across the human cancer landscape
Ali Hadizadeh Esfahani, Angelina Sverchkova, Julio Saez-Rodriguez, Andreas A Schuppert, Marc Brehme

bioRxiv 122044; doi: https://doi.org/10.1101/122044

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Network reconstruction and systems analysis of plant cell wall deconstruction by neurospora crassa
Areejit Samal, James P. Craig, Samuel T. Coradetti, J. Philipp Benz, James A. Eddy, Nathan D. Price, N. Louise Glass

bioRxiv 133165; doi: https://doi.org/10.1101/133165

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Faster growth with shorter antigens explains a VSG hierarchy during African trypanosome infections: a feint attack by parasites
Dianbo Liu, Luca Albergante, David Horn, Timothy Newman

bioRxiv 131029; doi: https://doi.org/10.1101/131029

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Modeling the dynamics of mouse iron body distribution: hepcidin is necessary but not sufficient
Jignesh H. Parmar, Grey Davis, Hope Shevchuk, Pedro Mendes

bioRxiv 062901; doi: https://doi.org/10.1101/062901

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Single Cell Phenotyping Reveals Heterogeneity among Haematopoietic Stem Cells Following Infection
Adam L MacLean, Maia A Smith, Juliane Liepe, Aaron Sim, Reema Khorshed, Narges M Rashidi, Nico Scherf, Axel Krinner, Ingo Roeder, Cristina Lo Celso, Michael PH Stumpf

bioRxiv 080416; doi: https://doi.org/10.1101/080416

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Quantitative assessment of cell fate decision between autophagy and apoptosis
Bing Liu, Zoltán N. Oltvai, Hulya Bayir, Gary A. Silverman, Stephen C. Pak, David H. Perlmutter, Ivet Bahar

bioRxiv 129767; doi: https://doi.org/10.1101/129767

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Systems Biology

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