Systems Biology

Effective Dynamic Models of Metabolic Networks
Michael Vilkhovoy, Mason Minot, Jeffrey D. Varner

bioRxiv 047316; doi: https://doi.org/10.1101/047316

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Network analysis links genome-wide phenotypic and transcriptional stress responses in a bacterial pathogen with a large pan-genome
Paul A. Jensen, Zeyu Zhu, Tim van Opijnen

bioRxiv 071704; doi: https://doi.org/10.1101/071704

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Dynamics Robustness of Cascading Systems
Jonathan T. Young, Tetsuhiro S. Hatakeyama, Kunihiko Kaneko

bioRxiv 071589; doi: https://doi.org/10.1101/071589

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Numerical Analysis of the Immersed Boundary Method for Cell-Based Simulation
Fergus R. Cooper, Ruth E. Baker, Alexander G. Fletcher

bioRxiv 071423; doi: https://doi.org/10.1101/071423

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Deciphering the tissue specificity of the protein secretory pathway in humans
Amir Feizi, Francesco Gatto, Mathias Uhlen, Jens Nielsen

bioRxiv 070870; doi: https://doi.org/10.1101/070870

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Using approximate Bayesian computation to quantify cell-cell adhesion parameters in a cell migratory process
Robert J. H. Ross, R. E. Baker, Andrew Parker, M. J. Ford, R. L. Mort, C. A. Yates

bioRxiv 068791; doi: https://doi.org/10.1101/068791

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Ordinary Differential Equations in Cancer Biology
Margaret P. Chapman, Claire J. Tomlin

bioRxiv 071134; doi: https://doi.org/10.1101/071134 Confirmatory Results

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Role of autoregulation and relative synthesis of operon partners in alternative sigma factor networks
Jatin Narula, Abhinav Tiwari, Oleg A. Igoshin

bioRxiv 032359; doi: https://doi.org/10.1101/032359

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The Modular Adaptive Ribosome
Anupama Yadav, Aparna Radhakrishnan, Anshuman Panda, Amartya Singh, Himanshu Sinha, Gyan Bhanot

bioRxiv 068361; doi: https://doi.org/10.1101/068361

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A Systems-Level Model Reveals That 1,2-Propanediol Utilization Microcompartments Enhance Pathway Flux Through Intermediate Sequestration
Christopher M. Jakobson, Marilyn F. Slininger, Danielle Tullman-Ercek, Niall M. Mangan

bioRxiv 069542; doi: https://doi.org/10.1101/069542

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Systems Biology

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