Systems Biology

Probabilistic adaptation in changing microbial environments
Yarden Katz, Michael Springer

bioRxiv 065243; doi: https://doi.org/10.1101/065243

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Introducing py_emra: the Python module for Ensemble Modeling Robustness Analysis
Matthew K Theisen

bioRxiv 065177; doi: https://doi.org/10.1101/065177

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Accelerating computational Bayesian inference for stochastic biochemical reaction network models using multilevel Monte Carlo sampling
David J. Warne, Ruth E. Baker, Matthew J. Simpson

bioRxiv 064170; doi: https://doi.org/10.1101/064170

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Metabolic complementation in bacterial communities: necessary conditions and optimality
Matteo Mori, Miguel Ponce-de-León, Juli Peretó, Francisco Montero Montero

bioRxiv 064121; doi: https://doi.org/10.1101/064121

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How domain growth is implemented determines the long term behaviour of a cell population through its effect on spatial correlations
Robert J. H. Ross, R. E. Baker, C. A. Yates

bioRxiv 041509; doi: https://doi.org/10.1101/041509

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A High Density Map for Navigating the Human Polycomb Complexome
Simon Hauri, Federico Comoglio, Makiko Seimiya, Moritz Gerstung, Timo Glatter, Klaus Hansen, Ruedi Aebersold, Renato Paro, Matthias Gstaiger, Christian Beisel

bioRxiv 059964; doi: https://doi.org/10.1101/059964

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A Novel Multi-network Approach Reveals Tissue-specific Cellular Modulators of Fibrosis in Systemic Sclerosis, Pulmonary Fibrosis and Pulmonary Arterial Hypertension
Jaclyn N Taroni, Casey S Greene, Viktor Martyanov, Tammara A Wood, Romy Christmann, Harrison W Farber, Robert A Lafyatis, Christopher P Denton, Monique E Hinchcliff, Patricia A Pioli, J. Matthew Mahoney, Michael L Whitfield

bioRxiv 038950; doi: https://doi.org/10.1101/038950

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Single Cell Pluripotency Regulatory Networks
Patrick S. Stumpf, Rob Ewing, Ben D. MacArthur

bioRxiv 062422; doi: https://doi.org/10.1101/062422

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Environmental gene regulatory influence networks in rice (Oryza sativa):response to water deficit, high temperature and agricultural environments
Olivia Wilkins, Christoph Hafemeister, Anne Plessis, Meisha-Marika Holloway-Phillips, Gina M. Pham, Adrienne B. Nicotra, Glenn B. Gregorio, S.V. Krishna Jagadish, Endang M. Septiningsih, Richard Bonneau, Michael Purugganan

bioRxiv 042317; doi: https://doi.org/10.1101/042317

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A Comparison of the Costs and Benefits of Bacterial Gene Expression
Morgan N. Price, Kelly M. Wetmore, Adam M. Deutschbauer, Adam P. Arkin

bioRxiv 038851; doi: https://doi.org/10.1101/038851

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Systems Biology

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