Systems Biology

The combination of the functionalities of feedback circuits is determinant for the number and size of attractors of molecular networks
Eugenio Azpeitia, Stalin Muñoz, Daniel González-Tokman, Mariana Esther Martínez-Sánchez, Nathan Weinstein, Aurélien Naldi, Elena R. Álvarez-Buylla, David A Rosenblueth, Luis Mendoza

bioRxiv 060608; doi: https://doi.org/10.1101/060608

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Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast
Emanuel Gonçalves, Zrinka Raguz, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrao, Julio Saez-Rodriguez

bioRxiv 057398; doi: https://doi.org/10.1101/057398

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Petri Net-Based Graphical and Computational Modelling of Biological Systems
Alessandra Livigni, Laura O’Hara, Marta E. Polak, Tim Angus, Lee B. Smith, Tom C. Freeman

bioRxiv 047043; doi: https://doi.org/10.1101/047043

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Mechanistic Modeling and Analysis of the Mammalian Unfolded Protein Response
Anirikh Chakrabarti, Lina Aboulmouna, Jeffrey Varner

bioRxiv 060020; doi: https://doi.org/10.1101/060020

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Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism
Milan JA Van Hoek, Roeland MH Merks

bioRxiv 059956; doi: https://doi.org/10.1101/059956

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A Novel Algorithm for the Maximal Fit Problem in Boolean Networks
Guy Karlebach

bioRxiv 056358; doi: https://doi.org/10.1101/056358

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Distinct Cellular States Determine Calcium Signaling Response
Jason Yao, Roy Wollman

bioRxiv 059287; doi: https://doi.org/10.1101/059287

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The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study
M.E. Martinez-Sanchez, M. Hiriart, E. R. Alvarez-Buylla

bioRxiv 058743; doi: https://doi.org/10.1101/058743

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Modeling and Analysis of Hormone and Mitogenic Signal Integration in Prostate Cancer
Katharine V. Rogers, Joseph A. Wayman, Ryan Tasseff, Caitlin Gee, Matthew P. DeLisa, Jeffrey D. Varner

bioRxiv 058552; doi: https://doi.org/10.1101/058552

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Thanatotranscriptome: genes actively expressed after organismal death
Alex E. Pozhitkov, Rafik Neme, Tomislav Domazet-Lošo, Brian G. Leroux, Shivani Soni, Diethard Tautz, Peter A. Noble

bioRxiv 058305; doi: https://doi.org/10.1101/058305

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Systems Biology

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