Systems Biology

JuPOETs: A Constrained Multiobjective Optimization Approach to Estimate Biochemical Model Ensembles in the Julia Programming Language
David Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T Butcher, Jeffrey D. Varner

bioRxiv 056044; doi: https://doi.org/10.1101/056044

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Detecting differential growth of microbial populations with Gaussian process regression
Peter D Tonner, Cynthia L Darnell, Barbara E Engelhardt, Amy K Schmid

bioRxiv 055186; doi: https://doi.org/10.1101/055186

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Personalized characterization of diseases using sample-specific networks
Xiaoping Liu, Yuetong Wang, Hongbin Ji, Kazuyuki Aihara, Luonan Chen

bioRxiv 042838; doi: https://doi.org/10.1101/042838

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Highly expressed proteins prefer less informative amino acids
Guang-Zhong Wang

bioRxiv 054981; doi: https://doi.org/10.1101/054981

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MAMMOTh: a new database for curated MAthematical Models of bioMOlecular sysTems
Fedor Kazantsev, Ilya Akberdin, Sergey Lashin, Natalia Ree, Vladimir Timonov, Alexander Ratushny, Tamara Khlebodarova, Vitaly Likhoshvai

bioRxiv 053652; doi: https://doi.org/10.1101/053652

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Advances in the integration of transcriptional regulatory information into genome-scale metabolic models
R.P. Vivek-Ananth, Areejit Samal

bioRxiv 053520; doi: https://doi.org/10.1101/053520 Confirmatory Results

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Exact Bayesian lineage tree-based inference identifies Nanog negative autoregulation in mouse embryonic stem cells
Justin Feigelman, Stefan Ganscha, Simon Hastreiter, Michael Schwarzfischer, Adam Filipczyk, Timm Schroeder, Fabian J. Theis, Carsten Marr, Manfred Claassen

bioRxiv 053231; doi: https://doi.org/10.1101/053231

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Single-Cell Gene Expression Profiling and Cell State Dynamics: Collecting Data, Correlating Data Points and Connecting the Dots
Carsten Marr, Joseph X. Zhou, Sui Huang

bioRxiv 044743; doi: https://doi.org/10.1101/044743 Confirmatory Results

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Conceptual Confusion: The case of Epigenetics
Angela Oliveira Pisco, Aymeric Fouquier d’Hérouël, Sui Huang

bioRxiv 053009; doi: https://doi.org/10.1101/053009 Confirmatory Results

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System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects
Camille Terfve, Eduard Sabidó, Yibo Wu, Emanuel Gonçalves, Meena Choi, Stefania Vaga, Olga Vitek, Julio Saez-Rodriguez, Ruedi Aebersold

bioRxiv 051508; doi: https://doi.org/10.1101/051508

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Systems Biology

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