Systems Biology

Modeling the START transition in the budding yeast cell cycle
Janani Ravi, Kewalin Samart, Jason Zwolak

bioRxiv 2023.11.05.564806; doi: https://doi.org/10.1101/2023.11.05.564806 New Results

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PANAMA enabled high sensitivity dual nanoflow LC/MS metabolomics and proteomics analysis
Weiwei Lin, Fatemeh Mousavi, Benjamin C. Blum, Christian F. Heckendorf, Noah Lampl, Ryan Heckman, Hongbo Guo, Mark McComb, Andrew Emili

bioRxiv 2023.11.03.565531; doi: https://doi.org/10.1101/2023.11.03.565531 New Results

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Multimodal single cell-resolved spatial proteomics reveals pancreatic tumor heterogeneity
Yanfen Xu, Xi Wang, Yuan Li, Yiheng Mao, Yiran Su, Yun Yang, Weina Gao, Changying Fu, Wendong Chen, Xueting Ye, Fuchao Liang, Panzhu Bai, Ying Sun, Ruilian Xu, Ruijun Tian

bioRxiv 2023.11.04.565590; doi: https://doi.org/10.1101/2023.11.04.565590 New Results

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Flood-irrigated agriculture mediates climate-induced wetland scarcity for summering sandhill cranes in western North America
J. Patrick Donnelly, Daniel P. Collins, Jeffrey M. Knetter, James H. Gammonley, Matthew A. Boggie, Blake A. Grisham, M. Cathy Nowak, David E. Naugle

bioRxiv 2023.11.03.565509; doi: https://doi.org/10.1101/2023.11.03.565509 New Results

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Systematic elucidation of independently modulated genes in Lactobacillus plantarum reveals a trade-off between secondary and primary metabolism
Sizhe Qiu, Yidi Huang, Shishun Liang, Hong Zeng, Aidong Yang

bioRxiv 2023.11.03.565434; doi: https://doi.org/10.1101/2023.11.03.565434 New Results

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Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
Jeanette A.I. Johnson, Genevieve L. Stein-O’Brien, Max Booth, Randy Heiland, Furkan Kurtoglu, Daniel R. Bergman, Elmar Bucher, Atul Deshpande, André Forjaz, Michael Getz, Ines Godet, Melissa Lyman, John Metzcar, Jacob Mitchell, Andrew Raddatz, Heber Rocha, Jacobo Solorzano, Aneequa Sundus, Yafei Wang, Danielle Gilkes, Luciane T. Kagohara, Ashley L. Kiemen, Elizabeth D. Thompson, Denis Wirtz, Pei-Hsun Wu, Neeha Zaidi, Lei Zheng, Jacquelyn W. Zimmerman, Elizabeth M. Jaffee, Young Hwan Chang, Lisa M. Coussens, Joe W. Gray, Laura M. Heiser, Elana J. Fertig, Paul Macklin

bioRxiv 2023.09.17.557982; doi: https://doi.org/10.1101/2023.09.17.557982 New Results

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Short-term Pre-operative Methionine Restriction Induces Browning of Perivascular Adipose Tissue and Improves Vein Graft Remodeling in Mice
Peter Kip, Thijs J. Sluiter, Michael R. MacArthur, Ming Tao, Jonathan Jung, Sarah J. Mitchell, Sander Kooijman, Nicky Kruit, Josh Gorham, Jonathan G. Seidman, Paul H.A. Quax, Masanori Aikawa, C. Keith Ozaki, James R Mitchell, Margreet R. de Vries

bioRxiv 2023.11.02.565269; doi: https://doi.org/10.1101/2023.11.02.565269 New Results

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Bayesian ¹³C-metabolic flux analysis of parallel tracer experiments in granulocytes: A directional shift within the non-oxidative pentose phosphate pathway supports phagocytosis
Melanie Hogg, Eva-Maria Wolfschmitt, Ulrich Wachter, Fabian Zink, Peter Radermacher, Josef Albert Vogt

bioRxiv 2023.11.01.565126; doi: https://doi.org/10.1101/2023.11.01.565126 New Results

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Allometry of cell types in planarians by single cell transcriptomics
Elena Emili, Alberto Pérez-Posada, Maria D. Christodoulou, Jordi Solana

bioRxiv 2023.11.01.565140; doi: https://doi.org/10.1101/2023.11.01.565140 New Results

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Multicellular growth as a dynamic network of cells
Piyush Nanda, Julien Barrere, Thomas LaBar, Andrew W. Murray

bioRxiv 2023.11.02.565242; doi: https://doi.org/10.1101/2023.11.02.565242 New Results

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Systems Biology

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