Systems Biology

A multi-omic analysis of optineurin proteinopathy in a yeast model suggests the involvement of lipid metabolism in Amyotrophic Lateral Sclerosis
Daniel M. Bean, Silvia Hnatova, Michael Mülleder, Sandra Magalhães, Daniel J. H. Nightingale, Kathryn S. Lilley, Markus Ralser, Alexandra Nunes, Brian J. Goodfellow, Stephen G. Oliver

bioRxiv 605998; doi: https://doi.org/10.1101/605998
Optimal Mass Transport Kinetic Modeling for Head and Neck DCE-MRI: Initial Analysis
Rena Elkin, Saad Nadeem, Eve LoCastro, Ramesh Paudyal, Vaios Hatzoglou, Nancy Y. Lee, Amita Shukla-Dave, Joseph O. Deasy, Allen Tannenbaum

bioRxiv 612770; doi: https://doi.org/10.1101/612770
Control Theory Concepts for Modeling Uncertainty in Enzyme Kinetics of Biochemical Networks
Ljubisa Miskovic, Milenko Tokic, Georgios Savoglidis, Vassily Hatzimanikatis

bioRxiv 618777; doi: https://doi.org/10.1101/618777 New Results
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network
Andrei Zinovyev, Urszula Czerwinska, Laura Cantini, Emmanuel Barillot, Klaus M. Frahm, Dima L. Shepelyansky

bioRxiv 618447; doi: https://doi.org/10.1101/618447
Differential Metabolic and Multi-tissue Transcriptomic Responses to Fructose Consumption among Genetically Diverse Mice
Guanglin Zhang, Hyae Ran Byun, Zhe Ying, Montgomery Blencowe, Yuqi Zhao, Jason Hong, Le Shu, Karthick Chella Krishnan, Fernando Gomez-Pinilla, Xia Yang

bioRxiv 439562; doi: https://doi.org/10.1101/439562
Metabolic control of YAP via the acto-myosin system during liver regeneration
Kirstin Meyer, Hernan Morales-Navarrete, Sarah Seifert, Michaela Wilsch-Braeuninger, Uta Dahmen, Elly M. Tanaka, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial

bioRxiv 617878; doi: https://doi.org/10.1101/617878 New Results
Structure-based validation can drastically under-estimate error rate in proteome-wide cross-linking mass spectrometry studies
Kumar Yugandhar, Ting-Yi Wang, Haiyuan Yu

bioRxiv 617654; doi: https://doi.org/10.1101/617654 New Results
Information processing by endoplasmic reticulum stress sensors
Wylie Stroberg, Justin Eilertsen, Santiago Schnell

bioRxiv 617217; doi: https://doi.org/10.1101/617217 New Results
Plant-Necrotroph Co-transcriptome Networks Illuminate a Metabolic Battlefield
Wei Zhang, Jason A. Corwin, Daniel Copeland, Julie Feusier, Robert Eshbaugh, David E. Cook, Susana Atwell, Daniel J. Kliebenstein

bioRxiv 485235; doi: https://doi.org/10.1101/485235 New Results
Maximum Entropy Framework For Inference Of Cell Population Heterogeneity In Signaling Networks
Purushottam D. Dixit, Eugenia Lyashenko, Mario Niepel, Dennis Vitkup

bioRxiv 137513; doi: https://doi.org/10.1101/137513 New Results

Systems Biology

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