Systems Biology

Evolution from adherent to suspension – systems biology of HEK293 cell line development
Magdalena Malm, Rasool Saghaleyni, Magnus Lundqvist, Marco Giudici, Veronique Chotteau, Raymond Field, Paul Varley, Diane Hatton, Luigi Grassi, Thomas Svensson, Mathias Uhlen, Jens Nielsen, Johan Rockberg

bioRxiv 2020.01.29.924894; doi: https://doi.org/10.1101/2020.01.29.924894 New Results

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Dynamic landscape of protein occupancy across the Escherichia coli chromosome
Peter L. Freddolino, Thomas J. Goss, Haley M. Amemiya, Saeed Tavazoie

bioRxiv 2020.01.29.924811; doi: https://doi.org/10.1101/2020.01.29.924811 New Results

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A rate threshold mechanism regulates MAPK stress signaling and survival
Amanda N. Johnson, Guoliang Li, Hossein Jashnsaz, Alexander Thiemicke, Benjamin K. Kesler, Dustin C. Rogers, Gregor Neuert

bioRxiv 155267; doi: https://doi.org/10.1101/155267 New Results

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Gcn4 (ATF4) drives a methionine-dependent anabolic program by enabling metabolic precursor supply
Rajalakshmi Srinivasan, Adhish S. Walvekar, Aswin Seshasayee, Sunil Laxman

bioRxiv 2020.01.29.924274; doi: https://doi.org/10.1101/2020.01.29.924274 New Results

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Neural Circuit Dynamics for Sensory Detection
Sruti Mallik, Srinath Nizampatnam, Anirban Nandi, Debajit Saha, Baranidharan Raman, ShiNung Ching

bioRxiv 2020.01.28.923839; doi: https://doi.org/10.1101/2020.01.28.923839 New Results

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Diverse cell stimulation kinetics identify predictive signal transduction models
Hossein Jashnsaz, Zachary R Fox, Jason Hughes, Guoliang Li, Brian Munsky, Gregor Neuert

bioRxiv 2020.01.28.923755; doi: https://doi.org/10.1101/2020.01.28.923755 New Results

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PathExt: a general framework for path-based mining of omics-integrated biological networks
Narmada Sambaturu, Vaidehi Pusadkar, Sridhar Hannenhalli, Nagasuma Chandra

bioRxiv 2020.01.21.913418; doi: https://doi.org/10.1101/2020.01.21.913418 New Results

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Gene Expression Signature and Molecular Mechanism of Redox Homeostasis in Colorectal Cancer
Mehran Piran, Maryam Darayee, Mehrdad Piran, Neda Sepahi, Amir Rahimi

bioRxiv 2020.01.28.920553; doi: https://doi.org/10.1101/2020.01.28.920553 New Results

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Analysis of single-cell gene pair coexpression landscapes by stochastic kinetic modeling reveals gene-pair interactions in development
Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read

bioRxiv 815878; doi: https://doi.org/10.1101/815878 New Results

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A metabolic network-based approach for developing feeding strategies for CHO cells to increase monoclonal antibody production
Hamideh Fouladiha, Sayed-Amir Marashi, Fatemeh Torkashvand, Fereidoun Mahboudi, Nathan E. Lewis, Behrouz Vaziri

bioRxiv 751347; doi: https://doi.org/10.1101/751347 New Results

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Systems Biology

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