Systems Biology

Network controllability enrichment analysis reveals that SARS-CoV-2 infection tends to target indispensable nodes of a directed human protein-protein interaction network
Ho-Joon Lee

bioRxiv 2021.04.18.440358; doi: https://doi.org/10.1101/2021.04.18.440358 New Results

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Gene clustering coordinates transcriptional output of disparate biological processes in eukaryotes
Richard I. Joh, Michael S. Lawrence, Martin J. Aryee, Mo Motamedi

bioRxiv 2021.04.17.440292; doi: https://doi.org/10.1101/2021.04.17.440292 New Results

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Design of time-delayed safety switches for CRISPR gene therapy
Dashan Sun

bioRxiv 2021.04.17.440285; doi: https://doi.org/10.1101/2021.04.17.440285 New Results

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Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
Muhammad Arif, Martina Klevstig, Rui Benfeitas, Stephen Doran, Hasan Turkez, Mathias Uhlén, Maryam Clausen, Johannes Wikström, Damla Etal, Cheng Zhang, Malin Levin, Adil Mardinoglu, Jan Boren

bioRxiv 2020.10.28.358556; doi: https://doi.org/10.1101/2020.10.28.358556 New Results

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CrossTalkeR: Analysis and Visualisation of Ligand Receptor Networks
James S. Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa

bioRxiv 2021.01.20.427390; doi: https://doi.org/10.1101/2021.01.20.427390 New Results

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The Design Principles of Discrete Turing Patterning Systems
Thomas Leyshon, Elisa Tonello, David Schnoerr, Heike Siebert, Michael P.H. Stumpf

bioRxiv 2020.10.18.344135; doi: https://doi.org/10.1101/2020.10.18.344135 New Results

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Genome-scale modeling of Pseudomonas aeruginosa PA14 unveils its broad metabolic capabilities and role of metabolism in drug potentiation
Sanjeev Dahal, Laurence Yang

bioRxiv 2021.04.15.439930; doi: https://doi.org/10.1101/2021.04.15.439930 New Results

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Naturally occurring combinations of receptors from single cell transcriptomics in endothelial cells
Sergii Domanskyi, Alex Hakansson, Michelle Meng, Joshua S. Graff Zivin, Carlo Piermarocchi, Giovanni Paternostro, Napoleone Ferrara

bioRxiv 2021.01.04.425317; doi: https://doi.org/10.1101/2021.01.04.425317 New Results

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A combination of mRNA features influence the efficiency of leaderless mRNA translation initiation
Mohammed-Husain M. Bharmal, Alisa Gega, Jared M. Schrader

bioRxiv 2020.05.06.081141; doi: https://doi.org/10.1101/2020.05.06.081141 New Results

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A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience
João P.G. Santos, Kadri Pajo, Daniel Trpevski, Andrey Stepaniuk, Olivia Eriksson, Anu G. Nair, Daniel Keller, Jeanette Hellgren Kotaleski, Andrei Kramer

bioRxiv 2020.11.17.385203; doi: https://doi.org/10.1101/2020.11.17.385203 New Results

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Systems Biology

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