Systems Biology

The Plant PTM Viewer, a central resource exploring plant protein modifications. From site-seeing to protein function.
Patrick Willems, Alison Horne, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert

bioRxiv 415802; doi: https://doi.org/10.1101/415802 New Results
BNMCMC: a software for learning and visualizing Bayesian networks using MCMC methods
A. K. M. Azad, Salem A. Alyami, Jonathan M. Keith

bioRxiv 414953; doi: https://doi.org/10.1101/414953 New Results
Multiple sources of signal amplification within the B cell Ras/MAPK pathway
Justin Mclaurin, Orion Weiner

bioRxiv 415737; doi: https://doi.org/10.1101/415737 New Results
Immune differentiation regulator p100 tunes NF-κB responses to TNF
Budhaditya Chatterjee, Payel Roy, Uday Aditya Sarkar, Yashika Ratra, Meenakshi Chawla, James Gomes, Soumen Basak

bioRxiv 414425; doi: https://doi.org/10.1101/414425 New Results
Reconciling high-throughput gene essentiality data with metabolic network reconstructions
Anna Blazier, Jason A Papin

bioRxiv 415448; doi: https://doi.org/10.1101/415448 New Results
Prenatal Bisphenol A Exposure in Mice Induces Multi-tissue Multi-omics Disruptions Linking to Cardiometabolic Disorders
Le Shu, Qingying Meng, Brandon Tsai, Graciel Diamante, Yen-Wei Chen, Andrew Mikhail, Helen Luk, Beate Ritz, Patrick Allard, Xia Yang

bioRxiv 336214; doi: https://doi.org/10.1101/336214 New Results
Comparison of null models for combination drug therapy reveals Hand model as biochemically most plausible
Mark Sinzger, Jakob Vanhoefer, Carolin Loos, Jan Hasenauer

bioRxiv 409946; doi: https://doi.org/10.1101/409946 New Results
Integrative analysis of Paneth cell proteomic data from intestinal organoids reveals functional processes affected in Crohn's disease due to autophagy impairment
Emily Jones, Zoe Matthews, Lejla Gul, Padhmanand Sudhakar, Devina Divekar, Jasmine Buck, Matthew Jefferson, Stuart Armstrong, Alastair Watson, Simon Carding, Ulrike Mayer, Penny Powell, Isabelle Hautefort, Tom Wileman, Tamas Korcsmaros

bioRxiv 410027; doi: https://doi.org/10.1101/410027 New Results
Predicting the future direction of cell movement with convolutional neural networks
Shori Nishimoto, Yuta Tokuoka, Takahiro G Yamada, Noriko F Hiroi, Akira Funahashi

bioRxiv 388033; doi: https://doi.org/10.1101/388033 New Results
Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease Network Module
Amitabh Sharma, Maksim Kitsak, Michael C Cho, Asher Ameli, Xiaobo Zhou, Zhiqiang Jiang, James D Crapo, Terri H Beaty, Joerg Menche, Per S Bakke, Marc Santolini, Edwin K Silverman

bioRxiv 408229; doi: https://doi.org/10.1101/408229 New Results

Systems Biology

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