Systems Biology

MoonFit, a minimal interface for fitting ODE dynamical models, bridging simulation by experimentalists and customization by C++ programmers
Philippe A ROBERT, Henrik Jönsson, Michael Meyer-Hermann

bioRxiv 281188; doi: https://doi.org/10.1101/281188 New Results
A generalizable experimental framework for automated cell growth and laboratory evolution
Brandon G Wong, Christopher P Mancuso, Szilvia Kiriakov, Caleb J Bashor, Ahmad S Khalil

bioRxiv 280867; doi: https://doi.org/10.1101/280867 New Results
Signalling maps in cancer research: construction and data analysis
Maria Kondratova, Nicolas Sompairac, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein

bioRxiv 089409; doi: https://doi.org/10.1101/089409 New Results
Comparative Transcriptomic and Metabolomic Analyses in Response to Cold in Tartary Buckwheat (Fagopyrum tataricum)
Jin Jeon, Jae Kwang Kim, Qi Wu, Sang Un Park

bioRxiv 278432; doi: https://doi.org/10.1101/278432 New Results
Multi-study inference of regulatory networks for more accurate models of gene regulation
Dayanne M. Castro, Nick de Veaux, Emily R. Miraldi, Richard Bonneau

bioRxiv 279224; doi: https://doi.org/10.1101/279224 New Results
Improvement of the memory function by negative autoregulation of a mutual repression network in a stochastic environment
A.B.M. Shamim Ul Hasan, Hiroyuki Kurata, Sebastian Pechmann

bioRxiv 279109; doi: https://doi.org/10.1101/279109 New Results
The role of stochastic sequestration dynamics for intrinsic noise filtering in signaling network motifs
Debdas Paul, Nicole Radde

bioRxiv 278929; doi: https://doi.org/10.1101/278929 New Results
Gene regulatory network analysis identifies sex-linked differences in colon cancer drug metabolism processes
Camila Miranda Lopes-Ramos, Marieke L Kuijjer, Shuji Ogino, Charles S Fuchs, Dawn L DeMeo, Kimberly Glass, John Quackenbush

bioRxiv 277186; doi: https://doi.org/10.1101/277186 New Results
Microbiome inhibition of IRAK-4 by trimethylamine mediates metabolic and immune benefits in high-fat-diet-induced insulin resistance
Julien Chilloux, Francois Brial, Amandine Everard, David Smyth, Liyong Zhang, Hubert Plovier, Antonis Myridakis, Lesley Hoyles, Julian E Fuchs, Christine Blancher, Selin Gencer, Laura Martinez-Gili, Jane F Fearnside, Richard H Barton, Ana L Neves, Alice R Rothwell, Christelle Gerard, Sophie Calderari, Claire L Boulange, Saroor Patel, James Scott, Robert C Glen, Nigel J Gooderham, Jeremy K Nicholson, Dominique Gauguier, Peter P Liu, Patrice D Cani, Marc-Emmanuel E Dumas

bioRxiv 277434; doi: https://doi.org/10.1101/277434 New Results
Time Dependent Stochastic mRNA and Protein Synthesis in Piecewise-deterministic Models of Gene Networks.
Guilherme Innocentini, Arran Hodgkinson, Ovidiu Radulescu

bioRxiv 278226; doi: https://doi.org/10.1101/278226 New Results

Systems Biology

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