Systems Biology

Computing Signal Transduction in signaling networks modeled as Boolean Networks, Petri Nets and hypergraphs
Luis Sordo Vieira, Paola Vera-Licona

bioRxiv 272344; doi: https://doi.org/10.1101/272344 New Results
Single-cell transcriptomics characterizes cell types in the subventricular zone and uncovers molecular defects underlying impaired adult neurogenesis
Vera Zywitza, Aristotelis Misios, Lena Bunatyan, Thomas E. Willnow, Nikolaus Rajewsky

bioRxiv 365619; doi: https://doi.org/10.1101/365619 New Results
The Miniature-chemostat Aging Device: A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of replicatively aging yeast
David G. Hendrickson, Ilya Soifer, Bernd J. Wranik, Griffin Kim, Michael Robles, Patrick A. Gibney, R. Scott McIsaac

bioRxiv 363523; doi: https://doi.org/10.1101/363523 New Results
CNNC: Convolutional Neural Networks for Co-Expression Analysis
Ye Yuan, Ziv Bar-Joseph

bioRxiv 365007; doi: https://doi.org/10.1101/365007 New Results
Building mathematical models of biological systems with modelbase, a Python package for semi-automatic ODE assembly and construction of isotope-specific models
Oliver Ebenhoeh, Marvin van Aalst, Nima Philipp Saadat, Tim Nies, Anna Matuszynska

bioRxiv 362954; doi: https://doi.org/10.1101/362954 New Results
Decoupling of heterosis and inbreeding variances is evidenced in yeast's life-history and proteomic traits
Marianyela Petrizzelli, Dominique de Vienne, Christine Dillmann

bioRxiv 362418; doi: https://doi.org/10.1101/362418 Confirmatory Results
Population growth affects intrinsic and extrinsic noise in gene expression
Philipp Thomas

bioRxiv 362368; doi: https://doi.org/10.1101/362368 New Results
Micom: metagenome-scale modeling to infer metabolic interactions in the microbiota.
Christian Diener, Osbaldo Resendis-Antonio

bioRxiv 361907; doi: https://doi.org/10.1101/361907 New Results
Constructing predictive cancer systems biology models
Jennifer A Rohrs, Sahak Z Makaryan, Stacey D Finley

bioRxiv 360800; doi: https://doi.org/10.1101/360800 New Results
Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network
Peter Man-Un Ung, Masahiro Sonoshita, Alex P Scopton, Arvin C Dar, Ross L Cagan, Avner Schlessinger

bioRxiv 344192; doi: https://doi.org/10.1101/344192 New Results

Systems Biology

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