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qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots

Stephen D. Turner
doi: https://doi.org/10.1101/005165
Stephen D. Turner
1Department of Public Health Sciences, University of Virginia School of Medicine, Charlottesville, Virginia, USA
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ABSTRACT

Summary Genome-wide association studies (GWAS) have identified thousands of human trait-associated single nucleotide polymorphisms. Here, I describe a freely available R package for visualizing GWAS results using Q-Q and manhattan plots. The qqman package enables the flexible creation of manhattan plots, both genome-wide and for single chromosomes, with optional highlighting of SNPs of interest.

Availability qqman is released under the GNU General Public License, and is freely available on the Comprehensive R Archive Network (http://cran.r-project.org/package=qqman). The source code is available on GitHub (https://github.com/stephenturner/qqman).

Contact turner{at}virginia.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted May 14, 2014.
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qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots
Stephen D. Turner
bioRxiv 005165; doi: https://doi.org/10.1101/005165
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qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots
Stephen D. Turner
bioRxiv 005165; doi: https://doi.org/10.1101/005165

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