ABSTRACT
We introduce FinisherSC, a repeat-aware and scalable tool for upgrading de-novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.
Availability The tool and data are available and will be maintained at http://kakitone.github.io/finishingTool/
Contact dntse{at}stanford.edu
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Posted April 04, 2015.
FinisherSC : A repeat-aware tool for upgrading de-novo assembly using long reads
