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A systematic survey of an intragenic epistatic landscape

Claudia Bank, Ryan T. Hietpas, Jeffrey D. Jensen, Daniel N.A. Bolon
doi: https://doi.org/10.1101/010645
Claudia Bank
1School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
2Swiss Institute of Bioinformatics (SIB), 1015 Lausanne, Switzerland
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  • For correspondence: claudia.bank@epfl.ch
Ryan T. Hietpas
3Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester 01605, MA, USA
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Jeffrey D. Jensen
1School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
2Swiss Institute of Bioinformatics (SIB), 1015 Lausanne, Switzerland
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Daniel N.A. Bolon
3Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester 01605, MA, USA
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ABSTRACT

Mutations are the source of evolutionary variation. The interactions of multiple mutations can have important effects on fitness and evolutionary trajectories. We have recently described the distribution of fitness effects of all single mutations for a nine amino acid region of yeast Hsp90 (Hsp82) implicated in substrate binding. Here, we report and discuss the distribution of intragenic epistatic effects within this region in seven Hsp90 point mutant backgrounds of neutral to slightly deleterious effect, resulting in an analysis of more than 1000 double-mutants. We find negative epistasis between substitutions to be common, and positive epistasis to be rare – resulting in a pattern that indicates a drastic change in the distribution of fitness effects one step away from the wild type. This can be well explained by a concave relationship between phenotype and genotype (i.e., a concave shape of the local fitness landscape), suggesting mutational robustness intrinsic to the local sequence space. Structural analyses indicate that, in this region, epistatic effects are most pronounced when a solvent-inaccessible position is involved in the interaction. In contrast, all 18 observations of positive epistasis involved at least one mutation at a solvent-exposed position. By combining the analysis of evolutionary and biophysical properties of an epistatic landscape, these results contribute to a more detailed understanding of the complexity of protein evolution.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 23, 2014.
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A systematic survey of an intragenic epistatic landscape
Claudia Bank, Ryan T. Hietpas, Jeffrey D. Jensen, Daniel N.A. Bolon
bioRxiv 010645; doi: https://doi.org/10.1101/010645
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A systematic survey of an intragenic epistatic landscape
Claudia Bank, Ryan T. Hietpas, Jeffrey D. Jensen, Daniel N.A. Bolon
bioRxiv 010645; doi: https://doi.org/10.1101/010645

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