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E. coli populations in unpredictably fluctuating environments evolve to face novel stresses through enhanced efflux activity

Shraddha Madhav Karve, Sachit Daniel, Yashraj Deepak Chavhan, Abhishek Anand, Somendra Singh Kharola, Sutirth Dey
doi: https://doi.org/10.1101/011007
Shraddha Madhav Karve
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
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Sachit Daniel
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
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Yashraj Deepak Chavhan
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
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Abhishek Anand
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
2Indian Institute of Science Education and Research-Kolkata, Mohanpur 741246, West Bengal, India
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Somendra Singh Kharola
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
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Sutirth Dey
1Population Biology Laboratory, Biology Division, Indian Institute of Science Education and Research-Pune, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
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  • For correspondence: s.dey@iiserpune.ac.in
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Abstract

There is considerable understanding about how laboratory populations respond to predictable (constant or deteriorating-environment) selection for single environmental variables like temperature or pH. However, such insights may not apply when selection environments comprise multiple variables that fluctuate unpredictably, as is common in nature. To address this issue, we grew replicate laboratory populations of E. coli in nutrient broth whose pH and concentrations of salt (NaCl) and hydrogen peroxide (H2O2) were randomly changed daily. After ∼170 generations, the fitness of the selected populations had not increased in any of the three selection environments. However, these selected populations had significantly greater fitness in four novel environments which have no known fitness-correlation with tolerance to pH, NaCl or H2O2. Interestingly, contrary to expectations, hypermutators did not evolve. Instead, the selected populations evolved an increased ability for energy dependent efflux activity that might enable them to throw out toxins, including antibiotics, from the cell at a faster rate. This provides an alternate mechanism for how evolvability can evolve in bacteria and potentially lead to broad spectrum antibiotic resistance, even in the absence of prior antibiotic exposure. Given that environmental variability is increasing in nature, this might have serious consequences for public-health.

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Posted April 08, 2015.
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E. coli populations in unpredictably fluctuating environments evolve to face novel stresses through enhanced efflux activity
Shraddha Madhav Karve, Sachit Daniel, Yashraj Deepak Chavhan, Abhishek Anand, Somendra Singh Kharola, Sutirth Dey
bioRxiv 011007; doi: https://doi.org/10.1101/011007
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E. coli populations in unpredictably fluctuating environments evolve to face novel stresses through enhanced efflux activity
Shraddha Madhav Karve, Sachit Daniel, Yashraj Deepak Chavhan, Abhishek Anand, Somendra Singh Kharola, Sutirth Dey
bioRxiv 011007; doi: https://doi.org/10.1101/011007

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