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FusionCatcher – a tool for finding somatic fusion genes in paired-end RNA-sequencing data

Daniel Nicorici, Mihaela Şatalan, Henrik Edgren, Sara Kangaspeska, Astrid Murumägi, Olli Kallioniemi, Sami Virtanen, Olavi Kilkku
doi: https://doi.org/10.1101/011650
Daniel Nicorici
1Orion Corporation, P.O. Box 65, FI-02101 Espoo, Finland
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  • For correspondence: Daniel.Nicorici@gmail.com
Mihaela Şatalan
2Florida Hospital Heartland Medical Center, P.O. Box 9400, Sebring, Florida 33871-9400, USA
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Henrik Edgren
3Institute for Molecular Medicine Finland, P.O. Box 20, FI-00014 Helsinki, Finland
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Sara Kangaspeska
3Institute for Molecular Medicine Finland, P.O. Box 20, FI-00014 Helsinki, Finland
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Astrid Murumägi
3Institute for Molecular Medicine Finland, P.O. Box 20, FI-00014 Helsinki, Finland
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Olli Kallioniemi
3Institute for Molecular Medicine Finland, P.O. Box 20, FI-00014 Helsinki, Finland
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Sami Virtanen
1Orion Corporation, P.O. Box 65, FI-02101 Espoo, Finland
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Olavi Kilkku
1Orion Corporation, P.O. Box 65, FI-02101 Espoo, Finland
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Abstract

FusionCatcher is a software tool for finding somatic fusion genes in paired-end RNA-sequencing data from human or other vertebrates. FusionCatcher achieves competitive detection rates and real-time PCR validation rates in RNA-sequencing data from tumor cells. Fusion-Catcher is available at http://code.google.com/p/fusioncatcher/.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 19, 2014.
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FusionCatcher – a tool for finding somatic fusion genes in paired-end RNA-sequencing data
Daniel Nicorici, Mihaela Şatalan, Henrik Edgren, Sara Kangaspeska, Astrid Murumägi, Olli Kallioniemi, Sami Virtanen, Olavi Kilkku
bioRxiv 011650; doi: https://doi.org/10.1101/011650
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FusionCatcher – a tool for finding somatic fusion genes in paired-end RNA-sequencing data
Daniel Nicorici, Mihaela Şatalan, Henrik Edgren, Sara Kangaspeska, Astrid Murumägi, Olli Kallioniemi, Sami Virtanen, Olavi Kilkku
bioRxiv 011650; doi: https://doi.org/10.1101/011650

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