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regionReport: Interactive reports for region-based analyses

Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
doi: https://doi.org/10.1101/016659
Leonardo Collado-Torres
1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205 USA
2Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD 21205, USA
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Andrew E. Jaffe
1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205 USA
2Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD 21205, USA
3Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA
4Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore MD
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Jeffrey T. Leek
1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205 USA
3Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA
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  • For correspondence: andrew.jaffe@libd.org jtleek@gmail.com
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Summary

regionReport is a R package for generating detailed interactive reports from regions of the genome. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions, and reproducibility information. regionReport can easily be expanded with report templates for other specialized analyses. In particular, regionReport has an extensive report template for exploring derfinder results from annotation-agnostic RNA-seq differential expression analyses.

Availability regionReport is freely available via Bioconductor at bioconductor.org/packages/release/bioc/html/regionReport.html.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted March 17, 2015.
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regionReport: Interactive reports for region-based analyses
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
bioRxiv 016659; doi: https://doi.org/10.1101/016659
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regionReport: Interactive reports for region-based analyses
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
bioRxiv 016659; doi: https://doi.org/10.1101/016659

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