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Metagenome-assembled genomes uncover a global brackish microbiome

Luisa W. Hugerth, John Larsson, Johannes Alneberg, Markus V. Lindh, Catherine Legrand, Jarone Pinhassi, Anders F. Andersson
doi: https://doi.org/10.1101/018465
Luisa W. Hugerth
1KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, Tomtebodavägen 23A, SE-17165 Solna, SWEDEN
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John Larsson
2Centre for Ecology and Evolution in Microbial model Systems - EEMiS, Linnaeus University Barlastgatan 11, SE-39182, Kalmar, SWEDEN
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Johannes Alneberg
1KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, Tomtebodavägen 23A, SE-17165 Solna, SWEDEN
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Markus V. Lindh
2Centre for Ecology and Evolution in Microbial model Systems - EEMiS, Linnaeus University Barlastgatan 11, SE-39182, Kalmar, SWEDEN
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Catherine Legrand
2Centre for Ecology and Evolution in Microbial model Systems - EEMiS, Linnaeus University Barlastgatan 11, SE-39182, Kalmar, SWEDEN
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Jarone Pinhassi
2Centre for Ecology and Evolution in Microbial model Systems - EEMiS, Linnaeus University Barlastgatan 11, SE-39182, Kalmar, SWEDEN
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Anders F. Andersson
1KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, Tomtebodavägen 23A, SE-17165 Solna, SWEDEN
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  • For correspondence: anders.andersson@scilifelab.se
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HTML Page - index.htslp

Files in this Data Supplement:

  • Assembly statistics and COGs present in each bin
  • Phylogenetic tree for all bins and selected reference genomes in Newick format
  • Presence or absence of every COG/PFAM/TIGRFAM and enzyme in each approved bin
  • Transporter genes found in each gene cluster

HTML Page - index.htslp

Files in this Data Supplement:

  • Supplementary File 1 - SCG present in each MAG
  • Supplementary File 3 - presence/absence of COG, PFAM, TIGRFAM and enzymes
  • Supplementary File 4 - transporters present in each cluster
  • Supplemtary File 2 - complete phylogenetic tree in nwk format
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Posted April 24, 2015.
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Metagenome-assembled genomes uncover a global brackish microbiome
Luisa W. Hugerth, John Larsson, Johannes Alneberg, Markus V. Lindh, Catherine Legrand, Jarone Pinhassi, Anders F. Andersson
bioRxiv 018465; doi: https://doi.org/10.1101/018465
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Metagenome-assembled genomes uncover a global brackish microbiome
Luisa W. Hugerth, John Larsson, Johannes Alneberg, Markus V. Lindh, Catherine Legrand, Jarone Pinhassi, Anders F. Andersson
bioRxiv 018465; doi: https://doi.org/10.1101/018465

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