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Coalescent inference using serially sampled, high-throughput sequencing data from HIV infected patients

Kevin Dialdestoro, Jonas Andreas Sibbesen, Lasse Maretty, Jayna Raghwani, Astrid Gall, Paul Kellam, Oliver G. Pybus, Jotun Hein, Paul A. Jenkins
doi: https://doi.org/10.1101/020552
Kevin Dialdestoro
aDepartment of Statistics, University of Oxford, Oxford, United Kingdom
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Jonas Andreas Sibbesen
bThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark
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Lasse Maretty
bThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark
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Jayna Raghwani
cDepartment of Zoology, University of Oxford, Oxford, United Kingdom
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Astrid Gall
dWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Paul Kellam
dWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
eUCL/MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, United Kingdom
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Oliver G. Pybus
cDepartment of Zoology, University of Oxford, Oxford, United Kingdom
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Jotun Hein
aDepartment of Statistics, University of Oxford, Oxford, United Kingdom
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Paul A. Jenkins
fDepartment of Statistics, University of Warwick, Coventry, United Kingdom
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  • For correspondence: p.jenkins@warwick.ac.uk
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Article Information

doi 
https://doi.org/10.1101/020552
History 
  • June 7, 2015.

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  • You are currently viewing Version 1 of this article (June 7, 2015 - 16:35).
  • View Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Kevin Dialdestoroa,
  2. Jonas Andreas Sibbesenb*,
  3. Lasse Marettyb*,
  4. Jayna Raghwanic,
  5. Astrid Galld,
  6. Paul Kellamd,e,
  7. Oliver G. Pybusc,
  8. Jotun Heina and
  9. Paul A. Jenkinsf,†
  1. aDepartment of Statistics, University of Oxford, Oxford, United Kingdom
  2. bThe Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark
  3. cDepartment of Zoology, University of Oxford, Oxford, United Kingdom
  4. dWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
  5. eUCL/MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, United Kingdom
  6. fDepartment of Statistics, University of Warwick, Coventry, United Kingdom
  1. ↵†To whom correspondence may be addressed: p.jenkins{at}warwick.ac.uk
  1. ↵* These authors contributed equally to the work.

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Posted June 07, 2015.
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Coalescent inference using serially sampled, high-throughput sequencing data from HIV infected patients
Kevin Dialdestoro, Jonas Andreas Sibbesen, Lasse Maretty, Jayna Raghwani, Astrid Gall, Paul Kellam, Oliver G. Pybus, Jotun Hein, Paul A. Jenkins
bioRxiv 020552; doi: https://doi.org/10.1101/020552
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Coalescent inference using serially sampled, high-throughput sequencing data from HIV infected patients
Kevin Dialdestoro, Jonas Andreas Sibbesen, Lasse Maretty, Jayna Raghwani, Astrid Gall, Paul Kellam, Oliver G. Pybus, Jotun Hein, Paul A. Jenkins
bioRxiv 020552; doi: https://doi.org/10.1101/020552

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