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Automated discovery of relationships, models and principles in ecology

View ORCID ProfilePedro Cardoso, Paulo A. V. Borges, José C. Carvalho, François Rigal, Rosalina Gabriel, José Cascalho, Luís Correia
doi: https://doi.org/10.1101/027839
Pedro Cardoso
Finnish Museum of Natural History, University of Helsinki, P.O.Box 17 (Pohjoinen Rautatiekatu 13), 00014 Helsinki, Finland.CE3C – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: pborges@uac.pt, rigal@uac.pt, rgabriel@uac.pt
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  • ORCID record for Pedro Cardoso
  • For correspondence: pedro.cardoso@helsinki.fipborges@uac.ptrigal@uac.ptrgabriel@uac.pt
Paulo A. V. Borges
CE3C – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: pborges@uac.pt, rigal@uac.pt, rgabriel@uac.pt
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José C. Carvalho
CE3C – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: pborges@uac.pt, rigal@uac.pt, rgabriel@uac.ptDepartment of Biology, CBMA – Molecular and Environmental Centre, University of Minho, 4710-057 Braga, Portugal. E-mail: josecarvalho@bio.uminho.pt
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François Rigal
CE3C – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: pborges@uac.pt, rigal@uac.pt, rgabriel@uac.pt
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Rosalina Gabriel
CE3C – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: pborges@uac.pt, rigal@uac.pt, rgabriel@uac.pt
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José Cascalho
NIDes - Núcleo de Investigação e Desenvolvimento em e-Saúde, Departamento de Ciências Agrárias, Rua Capitão João d’Ávila, 9700-042 Angra do Heroísmo, Açores, Portugal. E-mail: jmc@uac.ptBioISI – Biosystems and Integrative Sciences Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal. E-mail: luis.correia@ciencias.ulisboa.pt
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Luís Correia
BioISI – Biosystems and Integrative Sciences Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal. E-mail: luis.correia@ciencias.ulisboa.pt
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ABSTRACT

  1. Ecological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most commonly used statistical modelling techniques can hardly reflect the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible through the use of massive computational power, particularly by means of Artificial Intelligence methods, such as evolutionary computation.

  2. Here we use symbolic regression (SR), which searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems.

  3. First, we demonstrate how SR can deal with complex datasets for: 1) modelling species richness; and 2) modelling species spatial distributions. Second, we illustrate how SR can be used to find general models in ecology, by using it to: 3) develop species richness estimators; and 4) develop the species-area relationship and the general dynamic model of oceanic island biogeography.

  4. All the examples suggest that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 26, 2016.
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Automated discovery of relationships, models and principles in ecology
Pedro Cardoso, Paulo A. V. Borges, José C. Carvalho, François Rigal, Rosalina Gabriel, José Cascalho, Luís Correia
bioRxiv 027839; doi: https://doi.org/10.1101/027839
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Automated discovery of relationships, models and principles in ecology
Pedro Cardoso, Paulo A. V. Borges, José C. Carvalho, François Rigal, Rosalina Gabriel, José Cascalho, Luís Correia
bioRxiv 027839; doi: https://doi.org/10.1101/027839

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