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A genome-wide resource for the analysis of protein localisation in Drosophila

Mihail Sarov, Chritiane Barz, Helena Jambor, Marco Y. Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay K.J. Vikas, R.T. Krisnan, K. Aishwarya, Irene R.S. Ferreira, Radoslaw K. Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K. VijayRaghavan, Pavel Tomancak, Frank Schnorrer
doi: https://doi.org/10.1101/028308
Mihail Sarov
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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  • For correspondence: sarov@mpi-cbg.de tomancak@mpi-cbg.de schnorrer@biochem.mpg.de
Chritiane Barz
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Helena Jambor
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Marco Y. Hein
3Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Christopher Schmied
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Dana Suchold
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Bettina Stender
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Stephan Janosch
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Vinay K.J. Vikas
4Centre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bald Bellary Road, Bangalore 560065, India
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R.T. Krisnan
4Centre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bald Bellary Road, Bangalore 560065, India
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K. Aishwarya
4Centre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bald Bellary Road, Bangalore 560065, India
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Irene R.S. Ferreira
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Radoslaw K. Ejsmont
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Katja Finkl
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Susanne Hasse
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Philipp Kämpfer
5Heidelberg Institute of Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany
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Nicole Plewka
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Elisabeth Vinis
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Siegfried Schloissnig
5Heidelberg Institute of Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany
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Elisabeth Knust
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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Volker Hartenstein
6Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, 610 Charles E. Young Drive, 5009 Terasaki Life Sciences Building, Los Angeles, CA 90095, USA
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Matthias Mann
3Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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Mani Ramaswami
7Institute of Neuroscience, Trinity College Dublin, Dublin 2, Ireland
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K. VijayRaghavan
4Centre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bald Bellary Road, Bangalore 560065, India
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Pavel Tomancak
1Max Planck Institute of Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany
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  • For correspondence: sarov@mpi-cbg.de tomancak@mpi-cbg.de schnorrer@biochem.mpg.de
Frank Schnorrer
2Muscle Dynamics Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
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  • For correspondence: sarov@mpi-cbg.de tomancak@mpi-cbg.de schnorrer@biochem.mpg.de
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Abstract

The Drosophila genome contains >13,000 protein coding genes, the majority of which remain poorly investigated. Important reasons include the lack of antibodies or reporter constructs to visualise these proteins. Here we present a genome-wide fosmid library of ≈10,000 GFP-tagged clones, comprising tagged genes and most of their regulatory information. For 880 tagged proteins we have created transgenic lines and for a total of 207 lines we have assessed protein expression and localisation in ovaries, embryos, pupae or adults by stainings and live imaging approaches. Importantly, we can visualise many proteins at endogenous expression levels and find a large fraction of them localising to subcellular compartments. Using complementation tests we demonstrate that two-thirds of the tagged proteins are fully functional. Moreover, our clones also enable interaction proteomics from developing pupae and adult flies. Taken together, this resource will enable systematic analysis of protein expression and localisation in various cellular and developmental contexts.

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Posted October 04, 2015.
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A genome-wide resource for the analysis of protein localisation in Drosophila
Mihail Sarov, Chritiane Barz, Helena Jambor, Marco Y. Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay K.J. Vikas, R.T. Krisnan, K. Aishwarya, Irene R.S. Ferreira, Radoslaw K. Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K. VijayRaghavan, Pavel Tomancak, Frank Schnorrer
bioRxiv 028308; doi: https://doi.org/10.1101/028308
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A genome-wide resource for the analysis of protein localisation in Drosophila
Mihail Sarov, Chritiane Barz, Helena Jambor, Marco Y. Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay K.J. Vikas, R.T. Krisnan, K. Aishwarya, Irene R.S. Ferreira, Radoslaw K. Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K. VijayRaghavan, Pavel Tomancak, Frank Schnorrer
bioRxiv 028308; doi: https://doi.org/10.1101/028308

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