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Sequenceserver: a modern graphical user interface for custom BLAST databases

Anurag Priyam, Ben J. Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, View ORCID ProfileYannick Wurm
doi: https://doi.org/10.1101/033142
Anurag Priyam
1School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.
2Department of Mechanical Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
115Bases Limited, London E9 7DR, United Kingdom.
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Ben J. Woodcroft
3Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Queensland, Australia.
115Bases Limited, London E9 7DR, United Kingdom.
12Previous address: Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, 3010, Victoria, Australia.
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Vivek Rai
4Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
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Alekhya Munagala
5Department of Mathematics, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
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Ismail Moghul
1School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.
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Filip Ter
6School of Electronic Engineering and Computer Science, Queen Mary University of London, London E1 4NS, United Kingdom.
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Mark Anthony Gibbins
7Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, United Kingdom.
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HongKee Moon
8Scientific Computing Facility, Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstr 108, 01307 Dresden, Germany.
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Guy Leonard
9Biosciences, University of Exeter, Geoffrey Pope Building, Exeter EX4 4QD, United Kingdom.
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Wolfgang Rumpf
10The Graduate School, University of Maryland, University College, Largo, MD, 20774, United States; and The Research Institute at Nationwide Children’s Hospital, Columbus, Ohio, 43205, United States
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Yannick Wurm
1School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.
115Bases Limited, London E9 7DR, United Kingdom.
13Previous address: Department of Ecology and Evolution and Swiss Institue of Bioinformatics, Université de Lausanne, 1015 Lausanne, Switzerland.
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  • ORCID record for Yannick Wurm
  • For correspondence: y.wurm@qmul.ac.uk
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Article Information

doi 
https://doi.org/10.1101/033142
History 
  • November 27, 2015.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Anurag Priyam1,2,11,
  2. Ben J. Woodcroft3,11,12,
  3. Vivek Rai4,
  4. Alekhya Munagala5,
  5. Ismail Moghul1,
  6. Filip Ter6,
  7. Mark Anthony Gibbins7,
  8. HongKee Moon8,
  9. Guy Leonard9,
  10. Wolfgang Rumpf10 and
  11. Yannick Wurm1,11,13,*
  1. 1School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.
  2. 2Department of Mechanical Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
  3. 3Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Queensland, Australia.
  4. 4Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
  5. 5Department of Mathematics, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
  6. 6School of Electronic Engineering and Computer Science, Queen Mary University of London, London E1 4NS, United Kingdom.
  7. 7Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, United Kingdom.
  8. 8Scientific Computing Facility, Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstr 108, 01307 Dresden, Germany.
  9. 9Biosciences, University of Exeter, Geoffrey Pope Building, Exeter EX4 4QD, United Kingdom.
  10. 10The Graduate School, University of Maryland, University College, Largo, MD, 20774, United States; and The Research Institute at Nationwide Children’s Hospital, Columbus, Ohio, 43205, United States
  11. 115Bases Limited, London E9 7DR, United Kingdom.
  12. 12Previous address: Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, 3010, Victoria, Australia.
  13. 13Previous address: Department of Ecology and Evolution and Swiss Institue of Bioinformatics, Université de Lausanne, 1015 Lausanne, Switzerland.
  1. ↵* To whom correspondence should be addressed: y.wurm{at}qmul.ac.uk
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Posted November 27, 2015.
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Sequenceserver: a modern graphical user interface for custom BLAST databases
Anurag Priyam, Ben J. Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, Yannick Wurm
bioRxiv 033142; doi: https://doi.org/10.1101/033142
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Sequenceserver: a modern graphical user interface for custom BLAST databases
Anurag Priyam, Ben J. Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, Yannick Wurm
bioRxiv 033142; doi: https://doi.org/10.1101/033142

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