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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

View ORCID ProfileJohn A. Lees, Minna Vehkala, Niko Välimäki, Simon R. Harris, Claire Chewapreecha, Nicholas J. Croucher, Pekka Marttinen, Antti Honkela, Julian Parkhill, Stephen D. Bentley, Jukka Corander
doi: https://doi.org/10.1101/038463
John A. Lees
1Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK
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  • ORCID record for John A. Lees
Minna Vehkala
2Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
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Niko Välimäki
3Department of Medical and Clinical Genetics, Genome-Scale Biology Research Program, University of Helsinki
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Simon R. Harris
1Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK
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Claire Chewapreecha
4Department of Medicine, University of Cambridge, Cambridge, UK
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Nicholas J. Croucher
5Department of Infectious Disease Epidemiology, Imperial College, London, UK
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Pekka Marttinen
6Department of Computer Science, Aalto University, Espoo, Finland
7Helsinki Institute of Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland
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Antti Honkela
8Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland
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Julian Parkhill
1Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK
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Stephen D. Bentley
1Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK
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Jukka Corander
2Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
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  • For correspondence: jukka.corander@helsinki.fi
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Article Information

doi 
https://doi.org/10.1101/038463
History 
  • February 2, 2016.

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  • You are currently viewing Version 1 of this article (February 2, 2016 - 00:26).
  • Version 2 (February 22, 2016 - 09:20).
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Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. John A. Lees1†,
  2. Minna Vehkala2†,
  3. Niko Välimäki3,
  4. Simon R. Harris1,
  5. Claire Chewapreecha4,
  6. Nicholas J. Croucher5,
  7. Pekka Marttinen6,7,
  8. Antti Honkela8,
  9. Julian Parkhill1,
  10. Stephen D. Bentley1 and
  11. Jukka Corander2,*
  1. 1Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK
  2. 2Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
  3. 3Department of Medical and Clinical Genetics, Genome-Scale Biology Research Program, University of Helsinki
  4. 4Department of Medicine, University of Cambridge, Cambridge, UK
  5. 5Department of Infectious Disease Epidemiology, Imperial College, London, UK
  6. 6Department of Computer Science, Aalto University, Espoo, Finland
  7. 7Helsinki Institute of Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland
  8. 8Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, Helsinki, Finland
  1. ↵* Corresponding author: jukka.corander{at}helsinki.fi
  1. ↵† These authors contributed equally.

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Posted February 02, 2016.
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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
John A. Lees, Minna Vehkala, Niko Välimäki, Simon R. Harris, Claire Chewapreecha, Nicholas J. Croucher, Pekka Marttinen, Antti Honkela, Julian Parkhill, Stephen D. Bentley, Jukka Corander
bioRxiv 038463; doi: https://doi.org/10.1101/038463
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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
John A. Lees, Minna Vehkala, Niko Välimäki, Simon R. Harris, Claire Chewapreecha, Nicholas J. Croucher, Pekka Marttinen, Antti Honkela, Julian Parkhill, Stephen D. Bentley, Jukka Corander
bioRxiv 038463; doi: https://doi.org/10.1101/038463

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