Article Information
History
- February 19, 2016.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Author Information
- Märt Roosaare1,*,
- Mihkel Vaher1,
- Lauris Kaplinski1,
- Märt Möls2,3,
- Reidar Andreson1,
- Maarja Lepamets1,
- Triinu Kõressaar1,
- Paul Naaber4,5,
- Siiri Kõljalg4,6 and
- Maido Remm1,2
- 1Department of Bioinformatics, IMCB, University of Tartu, Riia 23, EE-51010 Tartu, Estonia
- 2Estonian Biocentre, Riia 23, EE-51010 Tartu, Estonia
- 3Institute of Mathematical Statistics, University of Tartu, Liivi 2, EE-50409 Tartu, Estonia
- 4Department of Microbiology, University of Tartu, Ravila 19, EE-50411 Tartu, Estonia
- 5synlab Eesti, Väike-Paala 1, EE-11415 Tallinn, Estonia
- 6United Laboratories, Tartu University Clinics, L. Puusepa 1 a, EE-50406 Tartu, Estonia
- ↵*corresponding author, Correspondence to: mart.roosaare{at}ut.ee Author e-mail addresses: Märt Roosaare -mart.roosaare{at}ut.ee; Mihkel Vaher -mihkel.vaher{at}ut.ee; Reidar Andreson -reidar.andreson{at}ut.ee; Lauris Kaplinski -lauris.kaplinski{at}ut.ee; Triinu Kõressaar -triinu.koressaar{at}ut.ee, Maarja Lepamets -maarja.lepamets{at}ut.ee; Märt Möls -martm{at}ut.ee; Paul Naaber -Paul.Naaber{at}synlab.ee; Siiri Kõljalg -siiri.koljalg{at}ut.ee; Maido Remm - maido.remm{at}ut.ee
Posted February 19, 2016.
StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees
