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GenVisR: Genomic Visualizations in R

View ORCID ProfileZachary L. Skidmore, View ORCID ProfileAlex H. Wagner, View ORCID ProfileRobert Lesurf, View ORCID ProfileKatie M. Campbell, Jason Kunisaki, View ORCID ProfileObi L. Griffith, View ORCID ProfileMalachi Griffith
doi: https://doi.org/10.1101/043604
Zachary L. Skidmore
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
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  • ORCID record for Zachary L. Skidmore
Alex H. Wagner
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
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Robert Lesurf
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
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Katie M. Campbell
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
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Jason Kunisaki
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
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Obi L. Griffith
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
2Department of Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.,
3Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.,
4Department of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA.
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Malachi Griffith
1McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.,
2Department of Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.,
3Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.,
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  • For correspondence: ogriffit@genome.wustl.edu mgriffit@genome.wustl.edu
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Abstract

Summary Visualizing and summarizing data from genomic studies continues to be a challenge. Here we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and bioconductor.

Availability and Implementation GenVisR is an R package available via bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website.

Contact ogriffit{at}genome.wustl.edu, mgriffit{at}genome.wustl.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted March 26, 2016.
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GenVisR: Genomic Visualizations in R
Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith, Malachi Griffith
bioRxiv 043604; doi: https://doi.org/10.1101/043604
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GenVisR: Genomic Visualizations in R
Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith, Malachi Griffith
bioRxiv 043604; doi: https://doi.org/10.1101/043604

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