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Macroscopic Coherent Structures in a Stochastic Neural Network: From Interface Dynamics to Coarse-Grained Bifurcation Analysis

Daniele Avitabile, Kyle Wedgwood
doi: https://doi.org/10.1101/043976
Daniele Avitabile
*Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, NG2 7RD, UK
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Kyle Wedgwood
†Centre for Biomedical Modelling and Analysis, University of Exeter, RILD Building, Barrack Road, Exeter, EX2 5DW, UK
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Abstract

We study coarse pattern formation in a cellular automaton modelling a spatially-extended stochastic neural network. The model, originally proposed by Gong and Robinson [36], is known to support stationary and travelling bumps of localised activity. We pose the model on a ring and study the existence and stability of these patterns in various limits using a combination of analytical and numerical techniques. In a purely deterministic version of the model, posed on a continuum, we construct bumps and travelling waves analytically using standard interface methods from neural fields theory. In a stochastic version with Heaviside firing rate, we construct approximate analytical probability mass functions associated with bumps and travelling waves. In the full stochastic model posed on a discrete lattice, where a coarse analytic description is unavailable, we compute patterns and their linear stability using equation-free methods. The lifting procedure used in the coarse time-stepper is informed by the analysis in the deterministic and stochastic limits. In all settings, we identify the synaptic profile as a mesoscopic variable, and the width of the corresponding activity set as a macroscopic variable. Stationary and travelling bumps have similar meso‐ and macroscopic profiles, but different microscopic structure, hence we propose lifting operators which use microscopic motifs to disambiguate between them. We provide numerical evidence that waves are supported by a combination of high synaptic gain and long refractory times, while meandering bumps are elicited by short refractory times.

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Posted March 16, 2016.
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Macroscopic Coherent Structures in a Stochastic Neural Network: From Interface Dynamics to Coarse-Grained Bifurcation Analysis
Daniele Avitabile, Kyle Wedgwood
bioRxiv 043976; doi: https://doi.org/10.1101/043976
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Macroscopic Coherent Structures in a Stochastic Neural Network: From Interface Dynamics to Coarse-Grained Bifurcation Analysis
Daniele Avitabile, Kyle Wedgwood
bioRxiv 043976; doi: https://doi.org/10.1101/043976

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