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Charting Improvements in US Registry HLA Typing Ambiguity Using a Typing Resolution Score

Vanja Paunić, Loren Gragert, Joel Schneider, Carlheinz Müller, Martin Maiers
doi: https://doi.org/10.1101/050443
Vanja Paunić
1Bioinformatics Research, National Marrow Donor Program 3001 Broadway Street N.E., Suite 100 Minneapolis, MN 55413-1753 USA
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Loren Gragert
1Bioinformatics Research, National Marrow Donor Program 3001 Broadway Street N.E., Suite 100 Minneapolis, MN 55413-1753 USA
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Joel Schneider
1Bioinformatics Research, National Marrow Donor Program 3001 Broadway Street N.E., Suite 100 Minneapolis, MN 55413-1753 USA
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Carlheinz Müller
2Zentrales Knochenmarkspender Register für Deutschland Helmholtzstraße 10 89081 Ulm Germany
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Martin Maiers
1Bioinformatics Research, National Marrow Donor Program 3001 Broadway Street N.E., Suite 100 Minneapolis, MN 55413-1753 USA
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Abstract

Unrelated stem cell registries have been collecting HLA typing of volunteer bone marrow donors for over 25 years. Donor selection for hematopoietic stem cell transplantation is based primarily on matching the alleles of donors and patients at five polymorphic HLA loci. As HLA typing technologies have continually advanced since the beginnings of stem cell transplantation, registries have accrued typings of varied HLA typing ambiguity. We present a new typing resolution score, based on the likelihood of self-match, that allows the systematic comparison of HLA typings across different methods, data sets and populations. We apply the typing resolution score to chart improvement in HLA typing within the Be The Match Registry of the United States from the initiation of DNA-based HLA typing to the current state of high-resolution typing using next-generation sequencing technologies. In addition, we present a publicly available online tool for evaluation of any given HLA typing. This typing resolution score objectively evaluates HLA typing methods and can help define standards for acceptable recruitment HLA typing.

Footnotes

  • vpaunic{at}nmdp.org, 320-237-4088

  • lgragert{at}nmdp.org, 612-627-8148

  • jschneid{at}nmdp.org, 612-617-8321

  • carlheinz.mueller{at}zkrd.de, ? phone number

  • mmaiers{at}NMDP.ORG, 612-627-5892, 612-483-9756

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 26, 2016.
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Charting Improvements in US Registry HLA Typing Ambiguity Using a Typing Resolution Score
Vanja Paunić, Loren Gragert, Joel Schneider, Carlheinz Müller, Martin Maiers
bioRxiv 050443; doi: https://doi.org/10.1101/050443
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Charting Improvements in US Registry HLA Typing Ambiguity Using a Typing Resolution Score
Vanja Paunić, Loren Gragert, Joel Schneider, Carlheinz Müller, Martin Maiers
bioRxiv 050443; doi: https://doi.org/10.1101/050443

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