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A data acquisition and analysis pipeline for scanning angle interference microscopy

Catherine B. Carbone, Ronald D. Vale, Nico Stuurman
doi: https://doi.org/10.1101/050468
Catherine B. Carbone
Department of Cellular and Molecular Pharmacology and the Howard Hughes Medical Institute University of California San Francisco
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Ronald D. Vale
Department of Cellular and Molecular Pharmacology and the Howard Hughes Medical Institute University of California San Francisco
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Nico Stuurman
Department of Cellular and Molecular Pharmacology and the Howard Hughes Medical Institute University of California San Francisco
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Abstract

We describe open source software and hardware tools for calibrating, acquiring, and analyzing images for scanning angle interference microscopy (SAIM) analysis. These tools make it possible for any user with a TIRF microscope equipped with a motorized illumination unit to generate reconstructed images with nanometer precision in the axial (z) direction and diffraction-limited resolution in the lateral (xy) plane.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 26, 2016.
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A data acquisition and analysis pipeline for scanning angle interference microscopy
Catherine B. Carbone, Ronald D. Vale, Nico Stuurman
bioRxiv 050468; doi: https://doi.org/10.1101/050468
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A data acquisition and analysis pipeline for scanning angle interference microscopy
Catherine B. Carbone, Ronald D. Vale, Nico Stuurman
bioRxiv 050468; doi: https://doi.org/10.1101/050468

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