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AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data
Runxuan Zhang, Cristiane P. G. Calixto, Yamile Marquez, Peter Venhuizen, Nikoleta A. Tzioutziou, Wenbin Guo, Mark Spensley, Nicolas Frei dit Frey, Heribert Hirt, Allan B. James, Hugh G. Nimmo, Andrea Barta, Maria Kalyna, John W. S. Brown
doi: https://doi.org/10.1101/051938
Runxuan Zhang
1Informatics and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK
Cristiane P. G. Calixto
2Plant Sciences Division, College of Life Sciences, University of Dundee, Invergowrie, Dundee DD2 5DA, Scotland, UK
Yamile Marquez
3Max F. Perutz Laboratories, Medical University of Vienna, Dr. Bohrgasse 9/3, 1030, Vienna, Austria
9Current address: EMBL/CRG Research Unit in Systems Biology, Centre for Genomic Regulation (CRG), 88 Dr. Aiguader, Barcelona 08003, Spain.
Peter Venhuizen
3Max F. Perutz Laboratories, Medical University of Vienna, Dr. Bohrgasse 9/3, 1030, Vienna, Austria
Nikoleta A. Tzioutziou
2Plant Sciences Division, College of Life Sciences, University of Dundee, Invergowrie, Dundee DD2 5DA, Scotland, UK
Wenbin Guo
1Informatics and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK
2Plant Sciences Division, College of Life Sciences, University of Dundee, Invergowrie, Dundee DD2 5DA, Scotland, UK
Mark Spensley
4The Donnelly Centre, University of Toronto, 160 College Street, Toronto, Ontario, Canada
Nicolas Frei dit Frey
5Institute of Plant Sciences Paris Saclay, INRA-CNRS-UEVE, Orsay 91405, France
10Current address: Laboratoire de Recherche en Sciences Végétales, UMR5546, University of Toulouse 3, CNRS, 24 chemin de Borde Rouge, Auzeville, BP42617, 31326, Castanet-Tolosan, France.
Heribert Hirt
5Institute of Plant Sciences Paris Saclay, INRA-CNRS-UEVE, Orsay 91405, France
11Current address: Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia
Allan B. James
6Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, Scotland
Hugh G. Nimmo
6Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, Scotland
Andrea Barta
3Max F. Perutz Laboratories, Medical University of Vienna, Dr. Bohrgasse 9/3, 1030, Vienna, Austria
Maria Kalyna
7Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences - BOKU, Muthgasse 18, 1190 Vienna, Austria
John W. S. Brown
2Plant Sciences Division, College of Life Sciences, University of Dundee, Invergowrie, Dundee DD2 5DA, Scotland, UK
8Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK

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Posted May 06, 2016.
AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data
Runxuan Zhang, Cristiane P. G. Calixto, Yamile Marquez, Peter Venhuizen, Nikoleta A. Tzioutziou, Wenbin Guo, Mark Spensley, Nicolas Frei dit Frey, Heribert Hirt, Allan B. James, Hugh G. Nimmo, Andrea Barta, Maria Kalyna, John W. S. Brown
bioRxiv 051938; doi: https://doi.org/10.1101/051938
AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data
Runxuan Zhang, Cristiane P. G. Calixto, Yamile Marquez, Peter Venhuizen, Nikoleta A. Tzioutziou, Wenbin Guo, Mark Spensley, Nicolas Frei dit Frey, Heribert Hirt, Allan B. James, Hugh G. Nimmo, Andrea Barta, Maria Kalyna, John W. S. Brown
bioRxiv 051938; doi: https://doi.org/10.1101/051938
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