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Centrifuge: rapid and sensitive classification of metagenomic sequences

View ORCID ProfileDaehwan Kim, Li Song, Florian P. Breitwieser, View ORCID ProfileSteven L. Salzberg
doi: https://doi.org/10.1101/054965
Daehwan Kim
1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 1900 E. Monument St., Baltimore, MD,21205, USA
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Li Song
1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 1900 E. Monument St., Baltimore, MD,21205, USA
2Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USAll
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Florian P. Breitwieser
1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 1900 E. Monument St., Baltimore, MD,21205, USA
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Steven L. Salzberg
1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 1900 E. Monument St., Baltimore, MD,21205, USA
2Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USAll
3Departments of Biomedical Engineering and Biostatistics, Johns Hopkins University, Baltimore, MD, 21205, USA
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  • ORCID record for Steven L. Salzberg
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Article Information

doi 
https://doi.org/10.1101/054965
History 
  • May 25, 2016.

Article Versions

  • Version 1 (May 24, 2016 - 02:16).
  • You are viewing Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Daehwan Kim1†,
  2. Li Song1,2†,
  3. Florian P. Breitwieser1† and
  4. Steven L. Salzberg1,2,3
  1. 1Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 1900 E. Monument St., Baltimore, MD,21205, USA
  2. 2Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USAll
  3. 3Departments of Biomedical Engineering and Biostatistics, Johns Hopkins University, Baltimore, MD, 21205, USA
  1. ↵† Equal Contribution

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Posted May 25, 2016.
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Centrifuge: rapid and sensitive classification of metagenomic sequences
Daehwan Kim, Li Song, Florian P. Breitwieser, Steven L. Salzberg
bioRxiv 054965; doi: https://doi.org/10.1101/054965
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Centrifuge: rapid and sensitive classification of metagenomic sequences
Daehwan Kim, Li Song, Florian P. Breitwieser, Steven L. Salzberg
bioRxiv 054965; doi: https://doi.org/10.1101/054965

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