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Knowledge.Bio: A Web Application for Exploring, Building and Sharing Webs of Biomedical Relationships Mined from PubMed

Richard Bruskiewich, Kenneth Huellas-Bruskiewicz, Farzin Ahmed, Rajaram Kaliyaperumal, Mark Thompson, Erik Schultes, Kristina M. Hettne, Andrew I. Su, Benjamin M. Good
doi: https://doi.org/10.1101/055525
Richard Bruskiewich
1STAR Informatics/Delphinai Corporation, 104 – 2003 Clarke Street, Port Moody, BC, Canada V3H 4K2
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Kenneth Huellas-Bruskiewicz
1STAR Informatics/Delphinai Corporation, 104 – 2003 Clarke Street, Port Moody, BC, Canada V3H 4K2
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Farzin Ahmed
1STAR Informatics/Delphinai Corporation, 104 – 2003 Clarke Street, Port Moody, BC, Canada V3H 4K2
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Rajaram Kaliyaperumal
3Department of Human Genetics,Leiden University Medical Center, Leiden,The Netherlands
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Mark Thompson
3Department of Human Genetics,Leiden University Medical Center, Leiden,The Netherlands
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Erik Schultes
3Department of Human Genetics,Leiden University Medical Center, Leiden,The Netherlands
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Kristina M. Hettne
3Department of Human Genetics,Leiden University Medical Center, Leiden,The Netherlands
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Andrew I. Su
2Department of Molecular and Experimental Medicine,The Scripps Research Institute,10550 North Torrey Pines Road, La Jolla, CA, 92037
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Benjamin M. Good
2Department of Molecular and Experimental Medicine,The Scripps Research Institute,10550 North Torrey Pines Road, La Jolla, CA, 92037
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Abstract

Knowledge.Bio is a web platform that enhances access and interpretation of knowledge networks extracted from biomedical research literature. The interaction is mediated through a collaborative graphical user interface for building and evaluating maps of concepts and their relationships, alongside associated evidence. In the first release of this platform, conceptual relations are drawn from the Semantic Medline Database and the Implicitome, two compleme ntary resources derived from text mining of PubMed abstracts.

Availability— Knowledge.Bio is hosted at http://knowledge.bio/ and the open source code is available at http://bitbucket.org/sulab/kb1/.

Contact— asu{at}scripps.edu; bgood{at}scripps.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted May 26, 2016.
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Knowledge.Bio: A Web Application for Exploring, Building and Sharing Webs of Biomedical Relationships Mined from PubMed
Richard Bruskiewich, Kenneth Huellas-Bruskiewicz, Farzin Ahmed, Rajaram Kaliyaperumal, Mark Thompson, Erik Schultes, Kristina M. Hettne, Andrew I. Su, Benjamin M. Good
bioRxiv 055525; doi: https://doi.org/10.1101/055525
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Knowledge.Bio: A Web Application for Exploring, Building and Sharing Webs of Biomedical Relationships Mined from PubMed
Richard Bruskiewich, Kenneth Huellas-Bruskiewicz, Farzin Ahmed, Rajaram Kaliyaperumal, Mark Thompson, Erik Schultes, Kristina M. Hettne, Andrew I. Su, Benjamin M. Good
bioRxiv 055525; doi: https://doi.org/10.1101/055525

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