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Distinct Cellular States Determine Calcium Signaling Response

Jason Yao, Roy Wollman
doi: https://doi.org/10.1101/059287
Jason Yao
Departments of Chemistry and Biochemistry, Integrative Biology and Physiology, and Institute for Quantitative and Computational Biosciences (QCB), UCLA, Los Angeles, CA 90095, United States
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Roy Wollman
Departments of Chemistry and Biochemistry, Integrative Biology and Physiology, and Institute for Quantitative and Computational Biosciences (QCB), UCLA, Los Angeles, CA 90095, United States
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Abstract

The heterogeneity in mammalian cells signaling response is largely a result of preexisting cell-to-cell variability. It is unknown whether cell-to-cell variability rises from biochemical stochastic fluctuations or distinct cellular states. Here we utilize calcium response to ATP as a model for investigating the structure of heterogeneity within a population of cells and analyze whether distinct cellular response states co-exist. We use a functional definition of cellular state that is based on a mechanistic dynamical systems model of calcium signaling. Using Bayesian parameter inference we obtain high confidence parameter value distributions for several hundred cells, each fitted individually. Clustering the inferred parameter distributions revealed three major distinct cellular states within the population. The existence of distinct cellular states raises the possibility that the observed variability in response is a result of structured heterogeneity between cells. Our work shows how mechanistic models and single-cell parameter fitting can uncover hidden population structure and demonstrate the need for parameter inference at the single-cell level.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted June 16, 2016.
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Distinct Cellular States Determine Calcium Signaling Response
Jason Yao, Roy Wollman
bioRxiv 059287; doi: https://doi.org/10.1101/059287
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Distinct Cellular States Determine Calcium Signaling Response
Jason Yao, Roy Wollman
bioRxiv 059287; doi: https://doi.org/10.1101/059287

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