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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

View ORCID ProfileJohn Vivian, Arjun Rao, View ORCID ProfileFrank Austin Nothaft, Christopher Ketchum, Joel Armstrong, Adam Novak, Jacob Pfeil, Jake Narkizian, Alden D. Deran, Audrey Musselman-Brown, Hannes Schmidt, Peter Amstutz, Brian Craft, Mary Goldman, Kate Rosenbloom, Melissa Cline, Brian O'Connor, Megan Hanna, Chet Birger, W. James Kent, David A. Patterson, Anthony D. Joseph, Jingchun Zhu, Sasha Zaranek, Gad Getz, David Haussler, Benedict Paten
doi: https://doi.org/10.1101/062497
John Vivian
University of California Santa Cruz Genomics Institute;
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Arjun Rao
University of California Santa Cruz Genomics Institute;
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Frank Austin Nothaft
AMP Lab, University of California Berkeley;
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Christopher Ketchum
University of California Santa Cruz Genomics Institute;
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Joel Armstrong
University of California Santa Cruz Genomics Institute;
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Adam Novak
University of California Santa Cruz Genomics Institute;
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Jacob Pfeil
University of California Santa Cruz Genomics Institute;
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Jake Narkizian
University of California Santa Cruz Genomics Institute;
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Alden D. Deran
University of California Santa Cruz Genomics Institute;
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Audrey Musselman-Brown
University of California Santa Cruz Genomics Institute;
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Hannes Schmidt
University of California Santa Cruz Genomics Institute;
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Peter Amstutz
Curoverse;
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Brian Craft
University of California Santa Cruz Genomics Institute;
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Mary Goldman
University of California Santa Cruz Genomics Institute;
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Kate Rosenbloom
University of California Santa Cruz Genomics Institute;
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Melissa Cline
University of California Santa Cruz Genomics Institute;
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Brian O'Connor
University of California Santa Cruz Genomics Institute;
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Megan Hanna
Broad Institute of Harvard and Massachusetts Institute of Technology
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Chet Birger
Broad Institute of Harvard and Massachusetts Institute of Technology
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W. James Kent
University of California Santa Cruz Genomics Institute;
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David A. Patterson
AMP Lab, University of California Berkeley;
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Anthony D. Joseph
AMP Lab, University of California Berkeley;
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Jingchun Zhu
University of California Santa Cruz Genomics Institute;
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Sasha Zaranek
Curoverse;
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Gad Getz
Broad Institute of Harvard and Massachusetts Institute of Technology
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David Haussler
University of California Santa Cruz Genomics Institute;
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Benedict Paten
University of California Santa Cruz Genomics Institute;
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  • For correspondence: benedict@soe.ucsc.edu
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Article Information

doi 
https://doi.org/10.1101/062497
History 
  • July 7, 2016.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. John Vivian1 (jtvivian{at}gmail.com),
  2. Arjun Rao1,
  3. Frank Austin Nothaft2 (http://fnothaft.net),
  4. Christopher Ketchum1,
  5. Joel Armstrong1,
  6. Adam Novak1,
  7. Jacob Pfeil1,
  8. Jake Narkizian1,
  9. Alden D. Deran1,
  10. Audrey Musselman-Brown1,
  11. Hannes Schmidt1,
  12. Peter Amstutz3,
  13. Brian Craft1,
  14. Mary Goldman1,
  15. Kate Rosenbloom1,
  16. Melissa Cline1,
  17. Brian O'Connor1,
  18. Megan Hanna4,
  19. Chet Birger4,
  20. W. James Kent1,
  21. David A. Patterson2,
  22. Anthony D. Joseph2,
  23. Jingchun Zhu1,
  24. Sasha Zaranek3,
  25. Gad Getz4,
  26. David Haussler1 and
  27. Benedict Paten1,5 (benedict{at}soe.ucsc.edu)
  1. 1 University of California Santa Cruz Genomics Institute;
  2. 2 AMP Lab, University of California Berkeley;
  3. 3 Curoverse;
  4. 4 Broad Institute of Harvard and Massachusetts Institute of Technology
  1. ↵* Corresponding author; email: benedict{at}soe.ucsc.edu
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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
John Vivian, Arjun Rao, Frank Austin Nothaft, Christopher Ketchum, Joel Armstrong, Adam Novak, Jacob Pfeil, Jake Narkizian, Alden D. Deran, Audrey Musselman-Brown, Hannes Schmidt, Peter Amstutz, Brian Craft, Mary Goldman, Kate Rosenbloom, Melissa Cline, Brian O'Connor, Megan Hanna, Chet Birger, W. James Kent, David A. Patterson, Anthony D. Joseph, Jingchun Zhu, Sasha Zaranek, Gad Getz, David Haussler, Benedict Paten
bioRxiv 062497; doi: https://doi.org/10.1101/062497
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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
John Vivian, Arjun Rao, Frank Austin Nothaft, Christopher Ketchum, Joel Armstrong, Adam Novak, Jacob Pfeil, Jake Narkizian, Alden D. Deran, Audrey Musselman-Brown, Hannes Schmidt, Peter Amstutz, Brian Craft, Mary Goldman, Kate Rosenbloom, Melissa Cline, Brian O'Connor, Megan Hanna, Chet Birger, W. James Kent, David A. Patterson, Anthony D. Joseph, Jingchun Zhu, Sasha Zaranek, Gad Getz, David Haussler, Benedict Paten
bioRxiv 062497; doi: https://doi.org/10.1101/062497

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