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DIABLO: from multi-omics assays to biomarker discovery, an integrative approach

Amrit Singh, Benoit Gautier, Casey P. Shannon, View ORCID ProfileFlorian Rohart, Michael Vacher, Scott J Tebutt, View ORCID ProfileKim-Anh Le Cao
doi: https://doi.org/10.1101/067611
Amrit Singh
University of British Columbia;
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Benoit Gautier
The University of Queensland Diamantina Institute;
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Casey P. Shannon
PROOF Centre;
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Florian Rohart
The University of Queensland;
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Michael Vacher
The University of Western Australia
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Scott J Tebutt
University of British Columbia;
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Kim-Anh Le Cao
The University of Queensland Diamantina Institute;
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  • ORCID record for Kim-Anh Le Cao
  • For correspondence: kimanh.lecao@unimelb.edu.au
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Abstract

Systems biology approaches, leveraging multi-omics measurements, are needed to capture the complexity of biological networks while identifying the key molecular drivers of disease mechanisms. We present DIABLO, a novel integrative method to identify multi-omics biomarker panels that can discriminate between multiple phenotypic groups. In the multi-omics analyses of simulated and real-world datasets, DIABLO resulted in superior biological enrichment compared to other integrative methods, and achieved comparable predictive performance with existing multi-step classification schemes. DIABLO is a versatile approach that will benefit a diverse range of research areas, where multiple high dimensional datasets are available for the same set of specimens. DIABLO is implemented along with tools for model selection, and validation, as well as graphical outputs to assist in the interpretation of these integrative analyses (http://mixomics.org/).

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 20, 2018.
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DIABLO: from multi-omics assays to biomarker discovery, an integrative approach
Amrit Singh, Benoit Gautier, Casey P. Shannon, Florian Rohart, Michael Vacher, Scott J Tebutt, Kim-Anh Le Cao
bioRxiv 067611; doi: https://doi.org/10.1101/067611
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DIABLO: from multi-omics assays to biomarker discovery, an integrative approach
Amrit Singh, Benoit Gautier, Casey P. Shannon, Florian Rohart, Michael Vacher, Scott J Tebutt, Kim-Anh Le Cao
bioRxiv 067611; doi: https://doi.org/10.1101/067611

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