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A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila

Berta Verd, Erik Clark, Karl R. Wotton, Hilde Janssens, Eva Jiménez-Guri, Anton Crombach, Johannes Jaeger
doi: https://doi.org/10.1101/068072
Berta Verd
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
cKLI Klosterneuburg, Austria
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Erik Clark
dDepartment of Zoology, University of Cambridge, Cambridge, UK
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Karl R. Wotton
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
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Hilde Janssens
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
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Eva Jiménez-Guri
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
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Anton Crombach
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
eWissenschaftskolleg zu Berlin, Germany
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Johannes Jaeger
aEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain
bUniversitat Pompeu Fabra (UPF), Barcelona, Spain
cKLI Klosterneuburg, Austria
eWissenschaftskolleg zu Berlin, Germany
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Abstract

Insects determine their body segments in two different ways. Short-germband insects, such as the flour beetle Tribolium castaneum, use a molecular clock to establish segments sequentially. In contrast, long-germband insects, such as the vinegar fly Drosophila melanogaster, determine all segments simultaneously through a hierarchical cascade of gene regulation. Gap genes constitute the first layer of the Drosophila segmentation gene hierarchy, downstream of maternal gradients. We use data driven modelling and phase space analysis to show that shifting gap domains in the posterior half of the Drosophila embryo are an emergent property of a robust damped oscillator mechanism. The rate at which gap domains shift is determined by the level of maternal Caudal (Cad), which also regulates the frequency of the Tribolium molecular clock. Our evidence indicates that the regulatory dynamics underlying long- and short-germband segmentation are much more similar than previously thought. This similarity may help explain why long-germband segmentation evolved convergently multiple times during the radiation of the holometabolan insects.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted January 12, 2017.
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A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila
Berta Verd, Erik Clark, Karl R. Wotton, Hilde Janssens, Eva Jiménez-Guri, Anton Crombach, Johannes Jaeger
bioRxiv 068072; doi: https://doi.org/10.1101/068072
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A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila
Berta Verd, Erik Clark, Karl R. Wotton, Hilde Janssens, Eva Jiménez-Guri, Anton Crombach, Johannes Jaeger
bioRxiv 068072; doi: https://doi.org/10.1101/068072

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