- Supplemental Information
- Gene ontology enrichment results for singleton and expanded OrthoMCL families (see Section 10 SI)
- List of all potential translocation events supported by OrthoMCL outlier triads as described in Section 6.1 of the SI.
- WGS map with corrected bins.
- The TGACv1 map (scaffold id, chromosome, cM; only class 1 scaffolds)
- Scaffold, Position on TGACv1 map (chromosome:cM), and Map classification for all TGACv1 scaffolds that had at least one matching WGS marker.
- Primers used for translocation confirmation
- AUGUSTUS config file used in gene prediction.
- Peptide matches to TGACv1 genes and transcripts
- List of the 9642 triads of homoeologous genes, as defined in Section 10.1 of the SI
- Expression values, in TPM, for the transcripts in Supplemental_File_S10 across the analysed samples. See Section 11.5
- Pairwise Fisher test for the expression within a triad within each replicate. See Section 11.5 of the SI
- Evaluation of whether members of a triplet were expressed in a balanced or unbalanced way in a given sample. See Section 11.5 of the SI
- Collinear blocks identified between A,B and D genomes. See Section 11.6 of the SI
- Sequences of all NBS CDS in Fasta format. See Section 12.1 of the SI
- Sequences of all NBS-LRR CDS in Fasta format. See Section 12.1 of the SI
- Sequences of all translated NBS-LRR CDS in Fasta format. See Section 12.1 of the SI
- Sequences of all translated NBS CDS in Fasta format. See Section 12.1 of the SI
- cDNA sequences of manually annotated gluten genes. See Section 12.2 of the SI
- Coding sequences of manually annotated gluten genes. See Section 12.2 of the SI.
- Protein sequences of manually annotated gluten genes. See Section 12.2 of the SI.
- Gene position and structure of manually annotated gluten genes. See Section 12.2 of the SI.
- Summary of manual gluten gene annotation. See Section 12.2 of the SI.
- Sequences of manually annotated gluten pseudogenes. See Section 12.2 of the SI.
- Sequence of scaffold 577042 of the TGACv1 assembly containing resistance genes. See Section 12.4 of the SI.
- Sequence of scaffold 080625 of the TGACv1 assembly containing gluten genes. See Section 12.4 of the SI.