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CancerGD: a resource for identifying and interpreting genetic dependencies in cancer

View ORCID ProfileStephen Bridgett, View ORCID ProfileJames Campbell, View ORCID ProfileChristopher J. Lord, View ORCID ProfileColm J. Ryan
doi: https://doi.org/10.1101/081992
Stephen Bridgett
1Systems Biology Ireland, University College Dublin, Belfield, Dublin 4, Ireland
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James Campbell
2The CRUK Gene Function Laboratory and Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, SW3 6JB, UK
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Christopher J. Lord
2The CRUK Gene Function Laboratory and Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, SW3 6JB, UK
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Colm J. Ryan
1Systems Biology Ireland, University College Dublin, Belfield, Dublin 4, Ireland
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  • ORCID record for Colm J. Ryan
  • For correspondence: colm.ryan@ucd.ie
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Abstract

Genes whose function is selectively essential in the presence of cancer associated genetic aberrations represent promising targets for the development of precision therapeutics. Here we present CancerGD (www.cancergd.org), a resource that integrates genotypic profiling with large-scale loss-of-function genetic screens in tumor cell lines to identify such genetic dependencies. CancerGD provides tools for searching, visualizing, and interpreting these genetic dependencies through the integration of functional interaction networks.

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Posted October 26, 2016.
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CancerGD: a resource for identifying and interpreting genetic dependencies in cancer
Stephen Bridgett, James Campbell, Christopher J. Lord, Colm J. Ryan
bioRxiv 081992; doi: https://doi.org/10.1101/081992
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CancerGD: a resource for identifying and interpreting genetic dependencies in cancer
Stephen Bridgett, James Campbell, Christopher J. Lord, Colm J. Ryan
bioRxiv 081992; doi: https://doi.org/10.1101/081992

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